Browse Element(s) Details


Os.56201.1.S1_at

Description gb:AK109606.1
DB_XREF= gi:32994815
TID=Os.56201.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F03, full insert sequence.
FL= gb:AK109606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3933011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56201.1.S1_at--263--1331Chr12:24170093..24170117 (25 bp)
AGAGGAAGATCTCCGCGTCGCTCTA
LOC_Os12g39330
Os.56201.1.S1_at--1044--5372Chr12:24170217..24170241 (25 bp)
GAAGAAGCAGAAATTCGCCGCCGCC
LOC_Os12g39330
Os.56201.1.S1_at--284--4611Chr12:24170354..24170378 (25 bp)
GCGACGTGCTGATGTGGAGCTCACT
LOC_Os12g39330
Os.56201.1.S1_at--290--1951Chr12:24170376..24170400 (25 bp)
ACTGGACTTGGCTCCGATTTGCCAC
LOC_Os12g39330
Os.56201.1.S1_at--434--4391Chr12:24170396..24170420 (25 bp)
GCCACATGGCATAGTTATTATTAGT
LOC_Os12g39330
Os.56201.1.S1_at--649--9811Chr12:24170423..24170447 (25 bp)
TAAACACCATACTTAATTAGGGCTG
LOC_Os12g39330
Os.56201.1.S1_at--865--8331Chr12:24170443..24170467 (25 bp)
GGCTGTGGAATTTCTTGGTGATGAC
LOC_Os12g39330
Os.56201.1.S1_at--1021--8311Chr12:24170485..24170509 (25 bp)
GGCTCAGACGAGAGCTCTGGAAATT
LOC_Os12g39330
Os.56201.1.S1_at--1040--10191Chr12:24170509..24170533 (25 bp)
TATTAGCTTTGCTTAGCTTTGCCCC
LOC_Os12g39330
Os.56201.1.S1_at--476--4532Chr12:24170529..24170553 (25 bp)
GCCCCAATTGTTTTGTTCAACAGCA
LOC_Os12g39330
Os.56201.1.S1_at--369--10431Chr12:24170569..24170593 (25 bp)
TTATCCTCTCTGATCATCTCATATA
LOC_Os12g39330
Target Sequence 
AGAGGAAGATCTCCGCGTCGCTCTACGCGCTCACCGGCGTCTCCGAGTGCCTCCGGATCCGCGCCGCCGCCGGCGCCACC
GCCGCTGCGCGGGACCACCTCACCGGCCTGAGAGAGGCTTGCCGGAAGAAGCAGAAATTCGCCGCCGCCGCGGCGGCGCC
GCCACAGCAGCAAGAACCATCTCCTCCTCCACAGCAGCCTGAGACGCCGGCGAGCTCAGGCGGCGGCATGTCGGAGACGG
CGAGCGGCGGCGGCGGCGACGGCGACGTGCTGATGTGGAGCTCACTGGACTTGGCTCCGATTTGCCACATGGCATAGTTA
TTATTAGTAGTAAACACCATACTTAATTAGGGCTGTGGAATTTCTTGGTGATGACATGCATGCATGGCTGATGGCTCAGA
CGAGAGCTCTGGAAATTATTAGCTTTGCTTAGCTTTGCCCCAATTGTTTTGTTCAACAGCAAAAAATAAAGTTTAGTTAT
CCTCTCTGATCATCTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis