Browse Element(s) Details


Os.57018.1.S1_at

Description gb:AK110753.1
DB_XREF= gi:32995962
TID=Os.57018.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-G10, full insert sequence.
FL= gb:AK110753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3934011/11glycosyl transferase, group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57018.1.S1_at--643--8811Chr12:24172238..24172262 (25 bp)
TGTTGCTGGGCTCCATTCAATGACA
LOC_Os12g39340
Os.57018.1.S1_at--390--7771Chr12:24171716..24172195 (25 bp)
GGTGCTATTCCAATTGCCCATAAAT
LOC_Os12g39340
Os.57018.1.S1_at--364--1411Chr12:24171646..24171670 (25 bp)
AGACAGGATTTCTAGCCTCCGAGAA
LOC_Os12g39340
Os.57018.1.S1_at--1112--10131Chr12:24171614..24171638 (25 bp)
TATGCCGAGGCAATTGTCAAGGTCT
LOC_Os12g39340
Os.57018.1.S1_at--688--2811Chr12:24171531..24171555 (25 bp)
AAGATTTTCTGAGCATAGGTTCCAT
LOC_Os12g39340
Os.57018.1.S1_at--98--191Chr12:24171502..24171526 (25 bp)
ATTTCACCGATGCAGTTCGCCCAAT
LOC_Os12g39340
Os.57018.1.S1_at--268--6711Chr12:24171488..24171512 (25 bp)
GTTCGCCCAATTTTGTCAGCAACAT
LOC_Os12g39340
Os.57018.1.S1_at--65--6111Chr12:24171446..24171470 (25 bp)
GAGTCTCCTCTTAACTGTCTGAAAC
LOC_Os12g39340
Os.57018.1.S1_at--796--631Chr12:24171392..24171416 (25 bp)
ATGAAGCTAACTGGCCAATTACTGG
LOC_Os12g39340
Os.57018.1.S1_at--957--3111Chr12:24171376..24171400 (25 bp)
AATTACTGGGTCTTGCATGCGGCAT
LOC_Os12g39340
Os.57018.1.S1_at--149--6851Chr12:24171239..24171263 (25 bp)
GTTTGGCTTTATCTACCGTTTGGAT
LOC_Os12g39340
Target Sequence 
TGTTGCTGGGCTCCATTCAATGACAGATGAGCATTTTGGGATAAGTGTTGTTGAATACATGGCTGCTGGTGCTATTCCAA
TTGCCCATAAATCGGCAGGACCAATGATGGACATTGTGCTAGATGAGGATGGCCAACAGACAGGATTTCTAGCCTCCGAG
AAGGAAGAATATGCCGAGGCAATTGTCAAGGTCTTGCGGATGCCGGAGGCAGAGAGGCATGAGATGGCAACAGCAGCACG
AAAACGCGCTCAAAGATTTTCTGAGCATAGGTTCCATGAAGATTTCACCGATGCAGTTCGCCCAATTTTGTCAGCAACAT
GAGCTTGACAAGCTAAGGAGTCTCCTCTTAACTGTCTGAAACACTAACAAGTTTCACATGATATGGTGACTATGAAGCTA
ACTGGCCAATTACTGGGTCTTGCATGCGGCATCCGTTTAAAGTGCGAGTTTTGCTTGAGTTTCCTTTTCTCTGTATTACT
TACATAGAGGTGCATCATGTACAGTACAGACTACAAACCACAAAAATGATAGATTGATGACTTTGTTTGGCTTTATCTAC
CGTTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis