Browse Element(s) Details


Os.24577.1.S1_at

Description gb:AK111649.1
DB_XREF= gi:37988312
TID=Os.24577.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134M11, full insert sequence.
FL= gb:AK111649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3932011/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24577.1.S1_at--22--8171Chr12:24163336..24163360 (25 bp)
GGAACAGATTTTTACCGATCTTCGA
LOC_Os12g39320
Os.24577.1.S1_at--366--6431Chr12:24163352..24163376 (25 bp)
GATCTTCGAAGCATATTCTACTGAG
LOC_Os12g39320
Os.24577.1.S1_at--820--8251Chr12:24163578..24163602 (25 bp)
GGCAGAATTCTTCAGCAATCTTGTA
LOC_Os12g39320
Os.24577.1.S1_at--836--6431Chr12:24163600..24163624 (25 bp)
GTAAATGCGTACTGTGACCCGGCGA
LOC_Os12g39320
Os.24577.1.S1_at--817--8931Chr12:24163614..24163638 (25 bp)
TGACCCGGCGATGAAACCTATCCAA
LOC_Os12g39320
Os.24577.1.S1_at--186--3271Chr12:24163636..24163660 (25 bp)
CAACACTCCTCGAATTCAGATGAAC
LOC_Os12g39320
Os.24577.1.S1_at--1007--291Chr12:24163697..24163721 (25 bp)
ATAGCTTGCAGCCTTACTGTCATGG
LOC_Os12g39320
Os.24577.1.S1_at--992--8571Chr12:24163731..24163755 (25 bp)
TGGTTTGACACCGATAATCAGGCAT
LOC_Os12g39320
Os.24577.1.S1_at--602--1771Chr12:24163766..24163790 (25 bp)
ACCTGTGCTTCTTCTTGTGATGTTA
LOC_Os12g39320
Os.24577.1.S1_at--768--4731Chr12:24163907..24163931 (25 bp)
GCTGTCAATGCAAACCTGTGTGGGT
LOC_Os12g39320
Os.24577.1.S1_at--132--7991Chr12:24163989..24164013 (25 bp)
GGATGTTCTTTTGCTTCAACCTATT
LOC_Os12g39320
Target Sequence 
GGAACAGATTTTTACCGATCTTCGAAGCATATTCTACTGAGTCATTGATAAAGAAAGACAGAGAAGAAGAGAGCAAACCA
GAAATGGCAGAATTCTTCAGCAATCTTGTAAATGCGTACTGTGACCCGGCGATGAAACCTATCCAACACTCCTCGAATTC
AGATGAACGCACTACNCCTCTATTGTCTTAGATCCAGATAAGTAATAGCTTGCAGCCTTACTGTCATGGCGTGAATTTTG
GTTTGACACCGATAATCAGGCATACAACAATACACCTGTGCTTCTTCTTGTGATGTTACTGTTGTAAAGCATTACTACAN
ACTTGACTGTGGAGTTGTTGTGCATATTTGATTTGTACATCTTAATTTGTGCTTACTGCGTAGAGATGAATAATGCATTG
CTCCTTAATGAAGTGCTGTCAATGCAAACCTGTGTGGGTTGTACTTCTAGATATGTCNAATCACCTTTATTTGTTCCCTT
CAAATTTTGTGTATATGGATGTTCTTTTGCTTCAACCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis