Browse Element(s) Details


Os.21767.1.S1_at

Description gb:BI813106
DB_XREF= gi:16579011
DB_XREF=J001D06
CLONE=J001D06
TID=Os.21767.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21767 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g393706/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA
LOC_Os12g39400Os.16453.1.S1_at11/1112+24203630..24204843Zinc finger, C2H2 type family protein, expressed
LOC_Os12g39410OsAffx.7836.1.S1_at11/1112+24209121..24211334hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21767.1.S1_at--1041--6751Chr12:24183762..24183787 (25 bp)
GTTAATACACAACCCTTCATATGCA
LOC_Os12g39370
Os.21767.1.S1_at--198--211NONE
ATTTGCTCCCACAGATTCACTATAC
NONE
Os.21767.1.S1_at--429--311NONE
ATACCAATTTGTTGTGACTGCTATT
NONE
Os.21767.1.S1_at--677--4871Chr12:24183874..24183898 (25 bp)
GCTATTTTCTTTAAGCCTCCGTATG
LOC_Os12g39370
Os.21767.1.S1_at--962--2011Chr12:24183913..24183937 (25 bp)
ACTAATTTTTCTTGAGTCTCCATAT
LOC_Os12g39370
Os.21767.1.S1_at--402--6771NONE
GTTAACTATATTACCACTCCATTTT
NONE
Os.21767.1.S1_at--793--3771Chr12:24183957..24183977 (21 bp)
CTCCATTTTTCTAAAGCTTCCCTAT
LOC_Os12g39370
Os.21767.1.S1_at--948--2691Chr12:24183966..24183990 (25 bp)
AAGCTTCCCTATGTGAACTGATTGA
LOC_Os12g39370
Os.21767.1.S1_at--176--2391NONE
AAACTTGAAGCGAGCCACAGGATTT
NONE
Os.21767.1.S1_at--153--5871NONE
GAGCCACAGGATTTGTGCCACAGGT
NONE
Os.21767.1.S1_at--1086--1651Chr12:24184140..24184261 (25 bp)
AGCGCCTTTGGAACCTGAACTGGAT
LOC_Os12g39370
Target Sequence 
GTTAATACACAACCCTTCATATGCATAATTTCACAGACTTGCATAGTATATTCTAGATTATTGCCCACCAAAATTTGCTC
CCACAGATTCACTATACCAATTTGTTGTGACTGCTATTTTCTTTAAGCCTCCGTATGTGAAATTAATGACTACTAATTTT
TCTTGAGTCTCCATATGTTAACTATATTACCACTCCATTTTTCTAAAGCTTCCCTATGTGAACTGATTGAGTATTCACTG
AATTTGCAGATCGAAATATCTTCAGTTCAACGATAATGAGCTTGTGGCGGAAAACTTGAAGCGAGCCACAGGATTTGTGC
CACAGGTGAAACAGCACGTAGTGTATGTTTAAAACACGGCAGCAGAGCAGCCGAGTAAAGCCATCAGCGCCTTTGGAACC
TGAACTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis