Browse Element(s) Details


Os.16453.1.S1_at

Description gb:AY219847.1
DB_XREF= gi:28849864
TID=Os.16453.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16453 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc finger transcription factor ZFP2 mRNA, complete cds.
PROD=zinc finger transcription factor ZFP2
FL= gb:AY219847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3940011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA
LOC_Os12g39400Os.16453.1.S1_at11/1112+24203630..24204843Zinc finger, C2H2 type family protein, expressed
LOC_Os12g39410OsAffx.7836.1.S1_at11/1112+24209121..24211334hypothetical protein
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16453.1.S1_at--807--5971Chr12:24204310..24204334 (25 bp)
GAGACGAAACCGGCGGCTATCGCGA
LOC_Os12g39400
Os.16453.1.S1_at--58--4131Chr12:24204237..24204261 (25 bp)
CGCACGAGTGCAACGTGTGCGGCAA
LOC_Os12g39400
Os.16453.1.S1_at--990--2671Chr12:24204178..24204202 (25 bp)
AAGCGATGCCACTACGACGGCACGA
LOC_Os12g39400
Os.16453.1.S1_at--462--2731Chr12:24203983..24204007 (25 bp)
AAGAAGCCCAGGCTCATGATCCCGG
LOC_Os12g39400
Os.16453.1.S1_at--179--711Chr12:24203968..24203992 (25 bp)
ATGATCCCGGCATAGCTAGCCAAGC
LOC_Os12g39400
Os.16453.1.S1_at--910--4851Chr12:24203954..24203978 (25 bp)
GCTAGCCAAGCCCACAAGATTTGTT
LOC_Os12g39400
Os.16453.1.S1_at--268--3231Chr12:24203940..24203964 (25 bp)
CAAGATTTGTTTAATTTTAGCCATA
LOC_Os12g39400
Os.16453.1.S1_at--415--9891Chr12:24203876..24203900 (25 bp)
TACTTTCTTAATTTGGTGATTAGTC
LOC_Os12g39400
Os.16453.1.S1_at--267--6871Chr12:24203835..24203859 (25 bp)
GTTTGTGTATATAGCCATTGTTTGT
LOC_Os12g39400
Os.16453.1.S1_at--498--1691Chr12:24203823..24203847 (25 bp)
AGCCATTGTTTGTTCATCTATCATT
LOC_Os12g39400
Os.16453.1.S1_at--141--6751Chr12:24203812..24203836 (25 bp)
GTTCATCTATCATTTGTATCTTGTA
LOC_Os12g39400
Target Sequence 
GAGACGAAACCGGCGGCTATCGCGACGCCGTCCTCGTCGGCGTCGGGCGTCTCCGGCGGCGGCGGCGGGAGGGCGCACGA
GTGCAACGTGTGCGGCAAGGCGTTCCCGACGGGGCAGGCGCTGGGCGGCCACAAGCGATGCCACTACGACGGCACGATCG
GCAGCGCCGCCGGCGCCGGCGCGTCCAAGCCGGCGGCGAAGACGACCGTGGCGGTGGCGGCGAGCCGGGGCTTCGACCTC
AACCTGCCGGCGCTGCCGGACGTCGCCGCCGCCGCCGACCAGCGGTGCGCGGCGGAGGACGACGAGGTGCTCAGCCCTCT
CGCCTTCAAGAAGCCCAGGCTCATGATCCCGGCATAGCTAGCCAAGCCCACAAGATTTGTTTAATTTTAGCCATAAAATT
CCATTAAATTAAACCCATAGTTTTTTCTGTTAATTACTTTCTTAATTTGGTGATTAGTCTTAGGAATGATGATTAGTTTG
TGTATATAGCCATTGTTTGTTCATCTATCATTTGTATCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis