Browse Element(s) Details


Os.8931.1.S1_x_at

Description gb:AK102529.1
DB_XREF= gi:32987738
TID=Os.8931.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096D06, full insert sequence.
FL= gb:AK102529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3942011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA
LOC_Os12g39400Os.16453.1.S1_at11/1112+24203630..24204843Zinc finger, C2H2 type family protein, expressed
LOC_Os12g39410OsAffx.7836.1.S1_at11/1112+24209121..24211334hypothetical protein
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39430OsAffx.20025.1.S1_at11/1112+24232447..24239295hypothetical protein
LOC_Os12g39440Os.52394.2.S1_at11/1112+24240327..24241955expressed protein
LOC_Os12g39440Os.52394.1.S1_x_at11/1112+24240327..24241955expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8931.1.S1_x_at--759--3771Chr12:24215351..24215375 (25 bp)
CTCTGATTGTTGCTTCTATCCTCAA
LOC_Os12g39420
Os.8931.1.S1_x_at--29--2971Chr12:24215526..24215550 (25 bp)
AATAATGACCCCTGTTGTTTGCGTT
LOC_Os12g39420
Os.8931.1.S1_x_at--494--7591Chr12:24215691..24215715 (25 bp)
GGGCTACCAATGCTAATCCTTGCAG
LOC_Os12g39420
Os.8931.1.S1_x_at--51--7291Chr12:24215829..24215853 (25 bp)
GTGCCATATTACTTCCATCATTACC
LOC_Os12g39420
Os.8931.1.S1_x_at--1003--5871Chr12:24215856..24215880 (25 bp)
GAGCGAATCACCTTCTTGTTTGAGA
LOC_Os12g39420
Os.8931.1.S1_x_at--811--1011Chr12:24215880..24215904 (25 bp)
AGGTATTCGTTGCTTCTTTGTATTG
LOC_Os12g39420
Os.8931.1.S1_x_at--814--31Chr12:24215907..24215931 (25 bp)
ATTGTGTGGGCCTTTGCAGCTATCC
LOC_Os12g39420
Os.8931.1.S1_x_at--672--571Chr12:24215928..24215952 (25 bp)
ATCCTTACTGCTGCTGGTGCATACA
LOC_Os12g39420
Os.8931.1.S1_x_at--413--5611Chr12:24215991..24216015 (25 bp)
GACAAGTCCTATCTCATATCATCGG
LOC_Os12g39420
Os.8931.1.S1_x_at--574--3191Chr12:24216158..24216182 (25 bp)
CAATCTTCACTGCAGGTCATTCATT
LOC_Os12g39420
Os.8931.1.S1_x_at--426--2071Chr12:24216201..24216310 (25 bp)
ACTTGTTTCTGCTTTTGAGTCCACT
LOC_Os12g39420
Target Sequence 
CTCTGATTGTTGCTTCTATCCTCAACATGATTCTTGGGTTCAGCACAATTTGGGGGGCATTCGCCAGGAAATTTAGTCCT
GTAATAATGACCCCTGTTGTTTGCGTTGTTGGTCTTGGGCTATTTGCACTTGGCTTTCCCCAGGTTGGAAAGTGTGTGGA
GATCGGGCTACCAATGCTAATCCTTGCAGTTGTTGTGCAACAGTATGTGCCATATTACTTCCATCATTACCATGAGCGAA
TCACCTTCTTGTTTGAGAGGTATTCGTTGCTTCTTTGTATTGGGATTGTGTGGGCCTTTGCAGCTATCCTTACTGCTGCT
GGTGCATACAACCATGTTTCACTCAAGACCCAGCAGCACTGCCGCACTGACAAGTCCTATCTCATATCATCGGCACCATG
GATCAAAATCCCATACCCCTTCCAATGGGGTACACCAATCTTCACTGCAGGTCATTCATTTGGAATGATGGGTGCTGTAC
TTGTTTCTGCTTTTGAGTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8931.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis