Browse Element(s) Details


Os.52394.2.S1_at

Description gb:AK071424.1
DB_XREF= gi:32981447
TID=Os.52394.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091J20, full insert sequence.
FL= gb:AK071424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3944011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39430OsAffx.20025.1.S1_at11/1112+24232447..24239295hypothetical protein
LOC_Os12g39440Os.52394.2.S1_at11/1112+24240327..24241955expressed protein
LOC_Os12g39440Os.52394.1.S1_x_at11/1112+24240327..24241955expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52394.2.S1_at--644--2252Chr07:14681369..14681393 (25 bp)
AAATTTGATATCCACTGACACCCTG
NONE
Os.52394.2.S1_at--1073--10411Chr12:24240675..24240699 (25 bp)
TTATAGCAGCAACCGCTGACTGCTC
LOC_Os12g39440
Os.52394.2.S1_at--255--5731Chr12:24240658..24240682 (25 bp)
GACTGCTCACTCAAACACATCAAAT
LOC_Os12g39440
Os.52394.2.S1_at--182--2271Chr12:24240637..24240661 (25 bp)
AAATCCTCAAACCTCAGCTGCGATG
LOC_Os12g39440
Os.52394.2.S1_at--608--9631Chr12:24240607..24240631 (25 bp)
TCATGGAGCTTGAGACCGTGTGTTC
LOC_Os12g39440
Os.52394.2.S1_at--628--5991Chr12:24240596..24240620 (25 bp)
GAGACCGTGTGTTCTGCATGCAGAG
LOC_Os12g39440
Os.52394.2.S1_at--1039--5031Chr12:24240577..24240601 (25 bp)
GCAGAGTACTCGAGCATATTGTAAT
LOC_Os12g39440
Os.52394.2.S1_at--318--831Chr12:24240530..24240554 (25 bp)
ATGGAAACAATGTGCCGGCGTCCCT
LOC_Os12g39440
Os.52394.2.S1_at--977--9331Chr12:24240438..24240462 (25 bp)
TCGCAGTGTTTGTGTAGTTTAGCTT
LOC_Os12g39440
Os.52394.2.S1_at--324--9551Chr12:24240378..24240402 (25 bp)
TCTATCGATGTATTATTGCGGTGAA
LOC_Os12g39440
Os.52394.2.S1_at--1011--10231Chr12:24240351..24240375 (25 bp)
TTTGACCTCAATCTTTTCACCCCAA
LOC_Os12g39440
Target Sequence 
AAATTTGATATCCACTGACACCCTGCTGAAATCAAACATGGCACTATTATTATAGCAGCAACCGCTGACTGCTCACTCAA
ACACATCAAATCCTCAAACCTCAGCTGCGATGCTAGCTCATGGAGCTTGAGACCGTGTGTTCTGCATGCAGAGTACTCGA
GCATATTGTAATTTTGGTGCAGTACTACAGTGGCATGGAAACAATGTGCCGGCGTCCCTTAGTCATGGCTCTGCCCAGCC
AACCCGACGAAGTGGTCATATGCTTAGTGTGTAAAAATTTTATTGTTCGCAGTGTTTGTGTAGTTTAGCTTGTAATNCAA
TGTGATAATCGTCAGTAAAAACTTTATCTATCGATGTATTATTGCGGTGAAAGTTTGACCTCAATCTTTTCACCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52394.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis