Browse Element(s) Details


Os.52394.1.S1_x_at

Description gb:AK066829.1
DB_XREF= gi:32976847
TID=Os.52394.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075O22, full insert sequence.
FL= gb:AK066829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3944011/11expressed protein
LOC_Os08g092001/11Aconitate hydratase, cytoplasmic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39430OsAffx.20025.1.S1_at11/1112+24232447..24239295hypothetical protein
LOC_Os12g39440Os.52394.2.S1_at11/1112+24240327..24241955expressed protein
LOC_Os12g39440Os.52394.1.S1_x_at11/1112+24240327..24241955expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003994molecular_functionaconitate hydratase activity
GO:0016829molecular_functionlyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52394.1.S1_x_at--277--2391Chr12:24241594..24241618 (25 bp)
AAACGGGATGTAACCCGATCCGCTG
LOC_Os12g39440
Os.52394.1.S1_x_at--484--1931Chr12:24241493..24241517 (25 bp)
ACGGACCAGCGCTGTATCGGTGAGA
LOC_Os12g39440
Os.52394.1.S1_x_at--301--7251Chr12:24241447..24241471 (25 bp)
GTCCCTGTGCTATGCGTGGATTCCA
LOC_Os12g39440
Os.52394.1.S1_x_at--157--6591Chr12:24241429..24241453 (25 bp)
GATTCCAGGCAGATTTGGCGCTGAT
LOC_Os12g39440
Os.52394.1.S1_x_at--1115--8871Chr12:24241408..24241432 (25 bp)
TGATGGCTGACATTGCCTGCGCAGG
LOC_Os12g39440
Os.52394.1.S1_x_at--454--3112Chr12:24241364..24241388 (25 bp)
AATTTCTTCCCTATCTACAAGCTGG
LOC_Os12g39440
Os.52394.1.S1_x_at--489--9111Chr12:24241144..24241348 (25 bp)
TGCGACACTTCTCATATTGCCGGCA
LOC_Os12g39440
Os.52394.1.S1_x_at--988--951Chr12:24241105..24241129 (25 bp)
AGGACTTCCTGAAGCTGAGCCCCGG
LOC_Os12g39440
Os.52394.1.S1_x_at--252--3052Chr07:14680828..14680852 (25 bp)
AATCTGCAGCTGTGGTTGGTATTCA
NONE
Os.52394.1.S1_x_at--220--8592Chr07:14680844..14680868 (25 bp)
TGGTATTCACACTCCACTATGATTG
NONE
Os.52394.1.S1_x_at--335--3872Chr12:24240949..24240973 (25 bp)
CTGATGGTTTGGGTGTTGCTGATTT
LOC_Os12g39440
Target Sequence 
AAACGGGATGTAACCCGATCCGCTGGGACCAGCGCCGGTGGCACCAGGAGAGCCGCGACAGGTCCGGGGCATCAGGCATG
GCTTCCTCCTCCTTGCTCATCACGGACCAGCGCTGTATCGGTGAGACCTGGCGGCTGGAGGCTGGCCGTCCCTGTGCTAT
GCGTGGATTCCAGGCAGATTTGGCGCTGATGGCTGACATTGCCTGCGCAGGGCCACACCTGCTGCTCGTCAATTTCTTCC
CTATCTACAAGCTGGGTCCTCACCAACACCTGCGACACTTCTCATATTGCCGGCACCCAAAGACAGCCGAGGACTTCCTG
AAGCTGAGCCCCGGCCGCAAGAAGAAATAATCTGCAGCTGTGGTTGGTATTCACACTCCACTATGATTGATGGAACTGAT
GGTTTGGGTGTTGCTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52394.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis