Browse Element(s) Details


OsAffx.20025.1.S1_at

Description tigr:9640.m03848
TID=OsAffx.20025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3943011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39410OsAffx.7836.1.S1_at11/1112+24209121..24211334hypothetical protein
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39430OsAffx.20025.1.S1_at11/1112+24232447..24239295hypothetical protein
LOC_Os12g39440Os.52394.2.S1_at11/1112+24240327..24241955expressed protein
LOC_Os12g39440Os.52394.1.S1_x_at11/1112+24240327..24241955expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20025.1.S1_at--955--1813Chr06:22186519..22186543 (25 bp)
ACCCATCTCTGCATGTGTTGGTTGG
NONE
OsAffx.20025.1.S1_at--782--4251Chr12:24236061..24236085 (25 bp)
CCGGACCAGCTACAGTGTGGCGAAA
LOC_Os12g39430
OsAffx.20025.1.S1_at--977--5691Chr12:24236032..24236056 (25 bp)
GACGAAAACCAATCGTTCCGGCAGC
LOC_Os12g39430
OsAffx.20025.1.S1_at--768--5031Chr12:24236012..24236036 (25 bp)
GCAGCAAATCGATGCCCTTAACGAA
LOC_Os12g39430
OsAffx.20025.1.S1_at--348--7611Chr12:24235947..24235971 (25 bp)
GGGAATTCGATAACCTACAACAGCA
LOC_Os12g39430
OsAffx.20025.1.S1_at--187--2491Chr12:24235931..24235953 (23 bp)
AACAGCAATACGACACGCTCCGGAG
LOC_Os12g39430
OsAffx.20025.1.S1_at--865--4652Chr12:24234040..24234062 (23 bp)
GCGTGAGTTGTATGCTGTCCTATTA
NONE
OsAffx.20025.1.S1_at--755--4951Chr12:24232758..24232782 (25 bp)
GCATTTCTTGCATATTGTTCGGCAC
LOC_Os12g39430
OsAffx.20025.1.S1_at--310--10611Chr12:24232741..24232765 (25 bp)
TTCGGCACAGGAGGCATCAGGACTT
LOC_Os12g39430
OsAffx.20025.1.S1_at--1051--391Chr12:24232726..24232750 (25 bp)
ATCAGGACTTACCATGCTACATGCT
LOC_Os12g39430
OsAffx.20025.1.S1_at--309--6511Chr12:24232553..24232575 (23 bp)
GATATCTGCATAGCGCGGCGATGAC
LOC_Os12g39430
Target Sequence 
ACCCATCTCTGCATGTGTTGGTTGGTTGGGCGAGGAGGATGATTGGGTTCCGGGTTTCGACGCCTGTGGGAGGCTGCGAT
GATGAGGAGGATGGACGTCGACAGCCCCAGCCCGGACCAGCTACAGTGTGGCGAAACATGGACGAAAACCAATCGTTCCG
GCAGCAAATCGATGCCCTTAACGAAAGGATAAGAATCCTGGAGAGGTACATTGAAGAAAAGAAGAGGGAATTCGATAACC
TACAACAGCAATACGACACGCTCCGGAGGCGTGAGTTGTATGCTGTCCTATTACGAGGACACACGAACACACGAACGAGA
AGAAAAACTCTCAAGATGAGAGAGATCGCATTTCTTGCATATTGTTCGGCACAGGAGGCATCAGGACTTACCATGCTACA
TGCTTTGGGGAGATATCTGCATAGCGCGGCGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis