Browse Element(s) Details


Os.51716.1.S1_at

Description gb:AK063508.1
DB_XREF= gi:32973526
TID=Os.51716.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F08, full insert sequence.
FL= gb:AK063508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3938011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed
LOC_Os12g39350NANA12+24175111..24175722hypothetical protein
LOC_Os12g39360Os.26801.1.A1_at11/1112+24179016..24181680Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g39370Os.18505.1.S1_at10/1112+24181881..24184314expressed protein
LOC_Os12g39370Os.21767.1.S1_at6/1112+24181881..24184314expressed protein
LOC_Os12g39380Os.51716.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39380Os.5361.1.S1_at11/1112+24184828..24191415transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g39389NANA12+24198971..24199256NA
LOC_Os12g39400Os.16453.1.S1_at11/1112+24203630..24204843Zinc finger, C2H2 type family protein, expressed
LOC_Os12g39410OsAffx.7836.1.S1_at11/1112+24209121..24211334hypothetical protein
LOC_Os12g39420Os.8931.1.S1_x_at11/1112+24212477..24218765xanthine/uracil permease family protein, expressed
LOC_Os12g39420Os.8931.2.S1_at4/1112+24212477..24218765xanthine/uracil permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51716.1.S1_at--188--10291Chr12:24188780..24188804 (25 bp)
TTTGCTGCTTTCTTTGCTTTATCAT
LOC_Os12g39380
Os.51716.1.S1_at--576--4891Chr12:24188765..24188789 (25 bp)
GCTTTATCATTTTGCCCATGGCACT
LOC_Os12g39380
Os.51716.1.S1_at--1111--811Chr12:24188748..24188772 (25 bp)
ATGGCACTTTTTCTAGGCTAACACT
LOC_Os12g39380
Os.51716.1.S1_at--499--7151Chr12:24188721..24188745 (25 bp)
GTCTCTCCTTTTGTTACACTTAGCG
LOC_Os12g39380
Os.51716.1.S1_at--174--10671Chr12:24188619..24188643 (25 bp)
TTCCAGGGACCTTTTGTTTCAATGT
LOC_Os12g39380
Os.51716.1.S1_at--177--10391Chr12:24188588..24188612 (25 bp)
TTTTCCAAGACAACCTTTTCACCAT
LOC_Os12g39380
Os.51716.1.S1_at--1045--571Chr12:24188565..24188589 (25 bp)
ATCCACTGTTGTGTGACCATTTGCC
LOC_Os12g39380
Os.51716.1.S1_at--791--10691Chr12:24188545..24188569 (25 bp)
TTGCCCCTGCAATCATTGTAGTCAG
LOC_Os12g39380
Os.51716.1.S1_at--579--4871Chr12:24188491..24188515 (25 bp)
GCTATTCACTATTATTTCCTCCATT
LOC_Os12g39380
Os.51716.1.S1_at--397--7491Chr12:24188446..24188470 (25 bp)
GTGGGAGTCCTCATTGTGCAACATG
LOC_Os12g39380
Os.51716.1.S1_at--242--9791Chr12:24188335..24188359 (25 bp)
TAAGCAGCTGTGAGACCGCAAACAT
LOC_Os12g39380
Target Sequence 
TTTGCTGCTTTCTTTGCTTTATCATTTTGCCCATGGCACTTTTTCTAGGCTAACACTCTGTCTCTCCTTTTGTTACACTT
AGCGGTTTCAGTGGGGCTGGAGATTTGATTTCATATGTCATTTCATCTTTATCATGAAGATGCATTATTAGATTGTTTAG
ATTCCAGGGACCTTTTGTTTCAATGTTCTTTTTTTTCCAAGACAACCTTTTCACCATCCACTGTTGTGTGACCATTTGCC
CCTGCAATCATTGTAGTCAGTCATATAAATAAAAGCACACAATTTATCAGCTATTCACTATTATTTCCTCCATTGCCATT
TCTAATGTAGTTTTGTGGGAGTCCTCATTGTGCAACATGATTATTAGTCTCTCAATTACTCCACAAAATAATCAACAGCC
ATTTCTCTCTCAAAAATGATCTTCAAGATATTCATATATAGCAATTAAGCAGCTGTGAGACCGCAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis