Browse Element(s) Details

Os.22946.1.S2_at

Description

gb:AK071262.1
DB_XREF= gi:32981285
TID=Os.22946.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085J06, full insert sequence.
FL= gb:AK071262.1 gb:AK073963.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50154	11/11	Translocon-associated protein alpha subunit precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50090	NA	NA	6	+	30345016..30345330	expressed protein
LOC_Os06g50100	Os.53323.1.S1_s_at	11/11	6	+	30345862..30349036	Protein kinase domain containing protein, expressed
LOC_Os06g50110	Os.6175.1.S1_at	11/11	6	+	30351996..30356040	expressed protein
LOC_Os06g50120	Os.47383.1.S1_at	10/11	6	+	30356703..30360200	Novel plant SNARE 11, putative, expressed
LOC_Os06g50130	Os.17198.1.S1_at	11/11	6	+	30361752..30362812	expressed protein
LOC_Os06g50140	Os.50481.1.S1_at	11/11	6	+	30363072..30365664	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g50154	Os.10917.1.S1_at	11/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154	Os.22946.1.S2_at	11/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154	Os.22946.1.S1_at	10/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50170	Os.16975.1.S1_at	11/11	6	+	30375356..30380323	brain and reproductive organ-expressed, putative, expressed
LOC_Os06g50180	Os.50494.1.A1_at	10/11	6	+	30382143..30385892	Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os06g50190	Os.2235.3.S1_x_at	11/11	6	+	30386919..30393175	retrotransposon protein, putative, unclassified
LOC_Os06g50190	Os.52007.1.S1_at	1/11	6	+	30386919..30393175	retrotransposon protein, putative, unclassified
LOC_Os06g50200	NA	NA	6	+	30396269..30399164	retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22946.1.S2_at--748--111	1	Chr06:30369120..30369144 (25 bp)	AGTGCAAGTTCATGGCGCTGAGCCG	LOC_Os06g50154
Os.22946.1.S2_at--530--891	1	Chr06:30369138..30369162 (25 bp)	TGAGCCGTCCCAACTAGCTGGATAC	LOC_Os06g50154
Os.22946.1.S2_at--944--677	1	Chr06:30369414..30369438 (25 bp)	GTTACGCTTGTTCAATGATGCCACT	LOC_Os06g50154
Os.22946.1.S2_at--555--299	1	Chr06:30369427..30369451 (25 bp)	AATGATGCCACTTACGAATTACCGT	LOC_Os06g50154
Os.22946.1.S2_at--944--521	1	Chr06:30369442..30369466 (25 bp)	GAATTACCGTCACTGCATTGTTGCA	LOC_Os06g50154
Os.22946.1.S2_at--782--553	1	Chr06:30369497..30369521 (25 bp)	GAAACAACGGATGGTGCCAACTGCT	LOC_Os06g50154
Os.22946.1.S2_at--677--255	1	Chr06:30369515..30369539 (25 bp)	AACTGCTGGCGAGTCCGTTCCAGGC	LOC_Os06g50154
Os.22946.1.S2_at--309--663	1	Chr06:30369594..30369618 (25 bp)	GTTGGGACTGTAAACCTGACATCTT	LOC_Os06g50154
Os.22946.1.S2_at--954--355	1	Chr06:30369613..30369637 (25 bp)	CATCTTTGTATTCTTGTAACTTGGA	LOC_Os06g50154
Os.22946.1.S2_at--6--761	1	Chr06:30369660..30369684 (25 bp)	GGGCACATTTGTCCGAATCCATAAA	LOC_Os06g50154
Os.22946.1.S2_at--76--725	1	Chr06:30369670..30369694 (25 bp)	GTCCGAATCCATAAATCCTCTGAAA	LOC_Os06g50154

Target Sequence

AGTGCAAGTTCATGGCGCTGAGCCGTCCCAACTAGCTGGATACTTCCTCCGTCCCAAAAAAAAAGGCAAACCCTGGGTTT
TCGTGTCCAACTTTAACGGTCCGTCTTATATGAAATTTTTTTATAATTCATATTTTCATTATTGTTAGATGATAAAACAT
GATTAATATTTTATGCGTGACTTGTCTTTTTTATTTTTTTCATAATTTTTTCAAATAAGATGGACGGTCAAACGTTGGAC
ACGGAAACCAGGGTTTGTTTTTTTTTGGAACGGAGGGAGTACATATGACAAGCTGTTACGCTTGTTCAATGATGCCACTT
ACGAATTACCGTCACTGCATTGTTGCAACAAGAAGAAGAGCTCCAGATAGATGTGGCGAAACAACGGATGGTGCCAACTG
CTGGCGAGTCCGTTCCAGGCACNCTGATTGCTGCTGCTGCAAACAAATTGTTTACCTTAATGTAGGTGTGATGTGTTGGG
ACTGTAAACCTGACATCTTTGTATTCTTGTAACTTGGAATTTGTGTAAAAAAAAAAANCCAGGGCACATTTGTCCGAATC
CATAAATCCTCTGAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis