Browse Element(s) Details


Os.23028.1.S1_s_at

Description gb:AK106987.1
DB_XREF= gi:32992196
TID=Os.23028.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A04, full insert sequence.
FL= gb:AK106987.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0849011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23028.1.S1_s_at--251--7191Chr03:4346878..4346902 (25 bp)
GTCGTCGTCAACCTCGTCGACAAAG
LOC_Os03g08490
Os.23028.1.S1_s_at--1136--4251Chr03:4346809..4346833 (25 bp)
CCGGACTTCTCGTGGCAGGGCATGT
LOC_Os03g08490
Os.23028.1.S1_s_at--678--9091Chr03:4346676..4346700 (25 bp)
TGCTCCCGGCGTCATTCGACAGTGA
LOC_Os03g08490
Os.23028.1.S1_s_at--818--10631Chr03:4346662..4346686 (25 bp)
TTCGACAGTGACAACAACACCGCCG
LOC_Os03g08490
Os.23028.1.S1_s_at--314--9371Chr03:4346619..4346643 (25 bp)
TCGACGATCCTTTCTTGTTCGGCGA
LOC_Os03g08490
Os.23028.1.S1_s_at--961--9551Chr03:4346607..4346631 (25 bp)
TCTTGTTCGGCGACCAGTTCGGCGA
LOC_Os03g08490
Os.23028.1.S1_s_at--416--1231Chr03:4346592..4346616 (25 bp)
AGTTCGGCGACCTCAACGGCGGCGC
LOC_Os03g08490
Os.23028.1.S1_s_at--569--3651Chr03:4346480..4346504 (25 bp)
CTTTCTCAACGCGTCGTACTATTAG
LOC_Os03g08490
Os.23028.1.S1_s_at--591--7191Chr03:4346468..4346492 (25 bp)
GTCGTACTATTAGCTAGGGCTTCCA
LOC_Os03g08490
Os.23028.1.S1_s_at--967--1071Chr03:4346453..4346477 (25 bp)
AGGGCTTCCATAGTTCTTGTACTTT
LOC_Os03g08490
Os.23028.1.S1_s_at--96--51Chr03:4346412..4346436 (25 bp)
ATTGTACTGATTGTTAACGTTGCCA
LOC_Os03g08490
Target Sequence 
GTCGTCGTCAACCTCGTCGACAAAGAGGCCGAGGTCAGCGAGAGCTCCGGTGCCAGCAGCAGCGCGCTGCCGGACTTCTC
GTGGCAGGGCATGTCGGCGTCGTCCGACGACGACGCCGCGGCGCAGCAGGCACTCCTCGACGCCGCCGGCGGCGCCAAGA
AGCGTCCCCGGAGCGAGCCCCACGTCACCTCCGACGACGAAGTGCTCCCGGCGTCATTCGACAGTGACAACAACACCGCC
GCCGCCGGCCTGCTCCCGCTCGACGATCCTTTCTTGTTCGGCGACCAGTTCGGCGACCTCAACGGCGGCGCGTTCGCCTC
GCTCATGGACGGGCTGTTCGCCGCCGGTGAAGCGAACGTCGCCGGCGAGAGCGTGGGGCTCTGGAGCTNCGGCGACGACT
TTCTCAACGCGTCGTACTATTAGCTAGGGCTTCCATAGTTCTTGTACTTTACTTGTACTGTACTGTATTGTACTGATTGT
TAACGTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23028.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis