Browse Element(s) Details


Os.23119.1.S1_at

Description gb:AK059226.1
DB_XREF= gi:32969244
TID=Os.23119.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D08, full insert sequence.
FL= gb:AK059226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g042509/11Glutathione S-transferase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04210OsAffx.3127.1.S1_at11/113+1915380..1916381IQ calmodulin-binding motif family protein, expressed
LOC_Os03g04220Os.14372.1.S1_at11/113+1917326..1918802Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04230NANA3+1924613..1926500transposon protein, putative, unclassified
LOC_Os03g04240Os.15269.1.S1_at11/113+1927427..1928654Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04250Os.23119.1.S1_at9/113+1931387..1932563Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04260Os.2614.1.S1_at11/113+1933783..1935070Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04270Os.25215.1.A1_at11/113+1935970..1938874Leucine Rich Repeat family protein, expressed
LOC_Os03g04290Os.35344.3.S1_x_at10/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290Os.35344.18.S1_x_at9/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.2.S1_s_at8/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.3.S1_x_at6/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.5.S1_x_at3/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.1.S1_s_at2/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04300Os.26758.1.A1_a_at11/113+1949407..1958621Ankyrin repeat protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23119.1.S1_at--423--91Chr03:1931917..1931941 (25 bp)
ATTCCCCAGGACCATGCTGTTATTG
LOC_Os03g04250
Os.23119.1.S1_at--414--2051Chr03:1931876..1931900 (25 bp)
ACTTCAGCAAGTCCTCAATGTTTAT
LOC_Os03g04250
Os.23119.1.S1_at--42--5311Chr03:1931748..1931772 (25 bp)
GAAGGAAGCTCTTCACTGGCAGGAA
LOC_Os03g04250
Os.23119.1.S1_at--227--7511Chr03:1931711..1931735 (25 bp)
GTGGTACGACCAAATCTCAAAGCGC
LOC_Os03g04250
Os.23119.1.S1_at--763--10191Chr03:1931621..1931645 (25 bp)
TATATTGCCCAAGTTCATCGTGTCC
LOC_Os03g04250
Os.23119.1.S1_at--420--8711Chr03:1931572..1931596 (25 bp)
TGTCCTGTGTTGTCATCGTCGCTAG
LOC_Os03g04250
Os.23119.1.S1_at--352--7251NONE
GTCCCCTGCTTATATTGTCGTGTGA
NONE
Os.23119.1.S1_at--799--2651Chr03:1931503..1931527 (25 bp)
AAGCCTCTTCTTGTTGTGACGTAGT
LOC_Os03g04250
Os.23119.1.S1_at--832--5751Chr03:1931486..1931510 (25 bp)
GACGTAGTTTCATACCATGTACCTC
LOC_Os03g04250
Os.23119.1.S1_at--1015--11Chr03:1931412..1931436 (25 bp)
ATTGTTAATCGACCTGGCAGTTCTA
LOC_Os03g04250
Os.23119.1.S1_at--900--9451NONE
TCTGGTGGTTTCTTCGCCTGAATAA
NONE
Target Sequence 
ATTCCCCAGGACCATGCTGTTATTGCAGAAAATGAGAAGAAACTTCAGCAAGTCCTCAATGTTTATGATGAGATACTCTC
AAAGAATGAGTACCTGGCTGGTGATGAGTTCACCCTGGCTGACCTTTCTCACCTTCCAAACTCACATTACATTGTGAGTT
CTGAGAGAGGAAGGAAGCTCTTCACTGGCAGGAAGAATGTGGCAAGGTGGTACGACCAAATCTCAAAGCGCGAGACATGG
AAGCAGGTGGTCAAGATGCAGAGGGAGCATCCGGGTGCATTCGAGTAATGGCCTGATATATTGCCCAAGTTCATCGTGTC
CGTTGTCGATCGATCTGGCTTCTGCTGTCCTGTGTTGTCATCGTCGCTAGTTTGCCTGTCCCCTGCTTATATTGTCGTGT
GACCAAATAATATGAAGCCTCTTCTTGTTGTGACGTAGTTTCATACCATGTACCTCGNTGCTTTACAGGTCATTTGTTTT
CTCCCTTGTTTAGTGATTAAATAAAATTGTTAATCGACCTGGCAGTTCTAAATCTGGTGGTTTCTTCGCCTGAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis