Browse Element(s) Details


Os.23163.1.S1_at

Description gb:AK059368.1
DB_XREF= gi:32969386
TID=Os.23163.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E10, full insert sequence.
FL= gb:AK059368.1 gb:AK122098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5331011/11Soluble starch synthase 3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53260OsAffx.26590.2.S1_at10/114+31508706..31510284Common central domain of tyrosinase family protein, expressed
LOC_Os04g53270NANA4+31511700..31514653retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23163.1.S1_at--183--3171Chr04:31533084..31533108 (25 bp)
AATTGTACCATTCCGCTCGCAAGAA
LOC_Os04g53310
Os.23163.1.S1_at--1148--2731Chr04:31533064..31533088 (25 bp)
AAGAACTGAGACCTTTCTAGCCCCA
LOC_Os04g53310
Os.23163.1.S1_at--418--931Chr04:31532932..31532956 (25 bp)
AGGAGAATCCAATCCCGGCTTCTAC
LOC_Os04g53310
Os.23163.1.S1_at--136--3191Chr04:31532881..31532905 (25 bp)
CAATTAATCTTTCCGTTATCCTGCG
LOC_Os04g53310
Os.23163.1.S1_at--94--4571Chr04:31532834..31532858 (25 bp)
GCGCCCGTGCGTATGTGACATGCAG
LOC_Os04g53310
Os.23163.1.S1_at--83--5411Chr04:31532809..31532833 (25 bp)
GAAGCTCATCGTGCTTAAAGCCAGT
LOC_Os04g53310
Os.23163.1.S1_at--1023--7971Chr04:31532693..31532717 (25 bp)
GGATGTTCTCTCTGGTTTATTTTCT
LOC_Os04g53310
Os.23163.1.S1_at--860--6811Chr04:31532679..31532703 (25 bp)
GTTTATTTTCTGCTCACTCGGAGAA
LOC_Os04g53310
Os.23163.1.S1_at--320--7371Chr04:31532628..31532652 (25 bp)
GTGACGGCCTGTGTAGCTTTTTAAT
LOC_Os04g53310
Os.23163.1.S1_at--387--9751Chr04:31532607..31532631 (25 bp)
TAATTTCTCGTGCTGACATCTCAAA
LOC_Os04g53310
Os.23163.1.S1_at--761--8251Chr04:31532568..31532592 (25 bp)
GGCAGCGTGAACCAAACCATCAATT
LOC_Os04g53310
Target Sequence 
AATTGTACCATTCCGCTCGCAAGAACTGAGACCTTTCTAGCCCCAAGAACACATGGATTTTGGGAAGTAGGTTTCCCCAG
GTTTCTGGGACATGCCGGCATCCCAGTACATACCCTTTCTCTGGGTACCATTCTTTAGACAGAAAGAAAATGAGGAGAAT
CCAATCCCGGCTTCTACATTGATCTCCAGCGTCAGTAAGAGATCAATTAATCTTTCCGTTATCCTGCGGTTGTGAGTTNG
CCATCGTACGGCGCCCGTGCGTATGTGACATGCAGGAAGCTCATCGTGCTTAAAGCCAGTTTTGCAAACATGTACCATGC
AAATATGTTCCATTTTACGATTNTGCAGTGTTTNGGATGTACATATGTAAGGCAGATTAGATTTGTAGGGCGGATGTTCT
CTCTGGTTTATTTTCTGCTCACTCGGAGAAGGAATGAAGTGCGAGCAGAATGGCATGTGACGGCCTGTGTAGCTTTTTAA
TTTCTCGTGCTGACATCTCAAAATTGATTTCAAATTGGCAGCGTGAACCAAACCATCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis