Browse Element(s) Details


Os.23189.1.S1_at

Description gb:CA759050
DB_XREF= gi:25803089
DB_XREF=BR060009B20A05.ab1
CLONE=BR060009B20A05.ab1
TID=Os.23189.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23189 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0502010/11tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g298801/11hypothetical protein
LOC_Os09g070101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04970NANA9+2672952..2676041retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04980OsAffx.29724.4.S1_at1/119+2679970..2680590hypothetical protein
LOC_Os09g04990Os.54379.1.S1_at11/119+2684795..2687286Cytoskeletal protein, putative, expressed
LOC_Os09g05000NANA9+2692800..2693939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05020Os.38393.1.S1_at11/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020Os.23189.1.S1_at10/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05020OsAffx.6178.1.S1_at9/119+2696308..2701656tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os09g05030Os.54128.1.S1_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05030Os.54128.1.S2_at11/119+2702214..2706348Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os09g05040OsAffx.17572.1.S1_at10/119+2710085..2711514hypothetical protein
LOC_Os09g05050NANA9+2715010..2715649retrotransposon, putative, centromere-specific
LOC_Os09g05060OsAffx.19542.3.S1_x_at3/119+2718889..2722767retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g05070OsAffx.8201.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified
LOC_Os09g05070OsAffx.22699.1.S1_x_at1/119+2725587..2730585retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23189.1.S1_at--178--10591Chr09:2697451..2697475 (25 bp)
TTCTGCTAGACCACACTTTACTAAG
LOC_Os09g05020
Os.23189.1.S1_at--511--1371Chr09:2697458..2697482 (25 bp)
AGACCACACTTTACTAAGCCATAGT
LOC_Os09g05020
Os.23189.1.S1_at--736--1171Chr09:2697480..2697504 (25 bp)
AGTAGATTTGGCAACTAAGACTGCA
LOC_Os09g05020
Os.23189.1.S1_at--1026--9031Chr09:2697501..2697525 (25 bp)
TGCAGTGCCAACTTCAGAAATTTGA
LOC_Os09g05020
Os.23189.1.S1_at--815--2531Chr09:2697531..2697555 (25 bp)
AACTCAAATCTTAAATGCGCTGATG
LOC_Os09g05020
Os.23189.1.S1_at--114--3031Chr09:2697544..2697568 (25 bp)
AATGCGCTGATGCAAAGCACAGGTA
LOC_Os09g05020
Os.23189.1.S1_at--812--4771Chr09:2697584..2697608 (25 bp)
GCTGCTGCTATCAAAAGCCCAGATT
LOC_Os09g05020
Os.23189.1.S1_at--695--2431Chr09:2697596..2697620 (25 bp)
AAAAGCCCAGATTCGCTATCCTCCA
LOC_Os09g05020
Os.23189.1.S1_at--146--10613Chr09:2697846..2697870 (25 bp)
TTCTGTCAAACTTTTGTGCTTGGGA
LOC_Os09g05020
Os.23189.1.S1_at--1062--49116Chr11:9811890..9811914 (25 bp)
GCTTGGGAGATGTTCTAGTTGTTTC
NONE
Os.23189.1.S1_at--494--8731NONE
TGAGTTTAAATAAAGCTTCCCTTAT
NONE
Target Sequence 
TTCTGCTAGACCACACTTTACTAAGCCATAGTAGATTTGGCAACTAAGACTGCAGTGCCAACTTCAGAAATTTGATGATA
AACTCAAATCTTAAATGCGCTGATGCAAAGCACAGGTAAAATAGACAGTGATTGCTGCTGCTATCAAAAGCCCAGATTCG
CTATCCTCCACCAACCGGGACCGCGGGATACTATTATGGTGGTATCTCGACGTTTGGACCAGGTGGCNCNGGAGTTTTTT
ACCNAGGAGCATGGGTGGCGGTNTNGTNTACGGATTGATAGCCNCTNAGATATACGGCGGTATCTCGACAGTTGGACCAG
GTGGCNCAGGAGTTTTTTACCCAGGAGCATGGGTGGCGGTNTAGCCTNCGGATTGATAGCCNCTAAGATATATGTTTCTG
TCAAACTTTTGTGCTTGGGAGATGTTCTAGTTGTTTCTTTNTTCTTTTTTGGCTGTGTGCATTTTATGCAGAGGCCGGGG
GTGACTCAGTTTGATTGTATCATCTTGATGTAATTAACTGAGTTTAAATAAAGCTTCCCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis