Browse Element(s) Details


Os.23246.1.A1_at

Description gb:CA759035
DB_XREF= gi:25803074
DB_XREF=BR060009A10H04.ab1
CLONE=BR060009A10H04.ab1
TID=Os.23246.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative kinesin-related protein (OSJNBa0001O14.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g399504/11Viral A-type inclusion protein repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39932NANA10+21044574..21045131hypothetical protein
LOC_Os10g39934OsAffx.29376.1.S1_x_at1/1110+21049526..21050406hypothetical protein
LOC_Os10g39936NANA10+21057126..21057812Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39940OsAffx.20154.1.S1_at10/1110+21058544..21059714hypothetical protein
LOC_Os10g39940Os.13877.1.S1_at3/1110+21058544..21059714hypothetical protein
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os10g39970Os.51008.1.S1_at11/1110+21077244..21078300Harpin-induced protein 1 containing protein, expressed
LOC_Os10g39980Os.46507.1.S1_at11/1110+21087608..21090146transmembrane protein, putative, expressed
LOC_Os10g39990OsAffx.6920.1.S1_at10/1110+21094679..21095948short-chain dehydrogenase/reductase, putative

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Gene Ontology Classification
GO idTypeName
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23246.1.A1_at--773--8171NONE
GGAACTAATGCGTGCCATAATTGTA
NONE
Os.23246.1.A1_at--587--2291Chr10:21060517..21060541 (25 bp)
AAATGATGTCCCCTGACTGTACTAA
LOC_Os10g39950
Os.23246.1.A1_at--305--8951Chr10:21060504..21060528 (25 bp)
TGACTGTACTAAAGGCTCTACCCCA
LOC_Os10g39950
Os.23246.1.A1_at--30--9971NONE
TACCCCAAAGAGTAGAGGCCTGTAA
NONE
Os.23246.1.A1_at--172--8051NONE
GGAGATTCTCCCTGCAAGGTTAAGA
NONE
Os.23246.1.A1_at--61--2551NONE
AACTCATTTTTGACCAATCCCTGTA
NONE
Os.23246.1.A1_at--739--4951Chr10:21060328..21060352 (25 bp)
GCAGGTCCAACCTAATATCCTAATT
LOC_Os10g39950
Os.23246.1.A1_at--937--7851NONE
GGTAGTATATAGTTCATCTCCCTCT
NONE
Os.23246.1.A1_at--25--471NONE
ATCTCCCTCTACACTTTGTAGGCTA
NONE
Os.23246.1.A1_at--726--331Chr10:21060198..21060222 (25 bp)
ATACACACTCGATTCTTTGTTCCAG
LOC_Os10g39950
Os.23246.1.A1_at--467--5191NONE
GCAATTACTGATTTTTTGGCCAAGA
NONE
Target Sequence 
GGAACTAATGCGTGCCATAATTGTAAGGCCCCCCCAGTCCAGGAAGAATGAAATCAATTTGGCGGCTACAAATTGCAAGA
AGCTGAATAATTGCAAGCAAGTGCAGAACTAAATGATGTCCCCTGACTGTACTAAAGGCTCTACCCCAAAGAGTAGAGGC
CTGTAAATTTGGCCGAGGCCCTGGTGAACAGTGGAGATTCTCCCTGCAAGGTTAAGAAATAACTCATTTTTGACCAATCC
CTGTAAGTTAGAGTAAAATTATTGGTTCATATGACCCCCGGAATCCCCCTGGCCTTTATGCAGGTCCAACCTAATATCCT
AATTGTTGATAAGGGTAGCTTTTTTTTGGGTGAATTATGTGTAAGAAGTAGGTAGTATATAGTTCATCTCCCTCTACACT
TTGTAGGCTATTGTTTTTTTCACGTATATATACACACTCGATTCTTTGTTCCAGCAATTACTGATTTTTTGGCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23246.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis