Browse Element(s) Details


Os.23264.1.A1_at

Description gb:CA759098
DB_XREF= gi:25803137
DB_XREF=BR060006A10E10.ab1
CLONE=BR060006A10E10.ab1
TID=Os.23264.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase 4 (OSJNBa0087H07.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0472010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed
LOC_Os10g04730Os.46730.1.S1_at11/1110+2241638..2246767Protein kinase domain containing protein, expressed
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23264.1.A1_at--173--10671Chr10:2234037..2234061 (25 bp)
TTCCGAGGGCCTCTTCTCTCCAAAA
LOC_Os10g04720
Os.23264.1.A1_at--909--10231Chr10:2233997..2234021 (25 bp)
TTTGGCGTTATAATTCTCGAGATCA
LOC_Os10g04720
Os.23264.1.A1_at--1107--5571Chr10:2233960..2233984 (25 bp)
GAAATGCCAGTTTAGATCAATGTGA
LOC_Os10g04720
Os.23264.1.A1_at--206--6511Chr10:2233829..2233939 (25 bp)
GATATGCATGGAAGTTGTGGTCAGA
LOC_Os10g04720
Os.23264.1.A1_at--675--1311Chr10:2233800..2233824 (25 bp)
AGATGGCTTGAACTTCTTGATGCAT
LOC_Os10g04720
Os.23264.1.A1_at--972--10851Chr10:2233773..2233797 (25 bp)
TTGGTTACAAATTGGCAGTCATCGT
LOC_Os10g04720
Os.23264.1.A1_at--314--9811Chr10:2233732..2233756 (25 bp)
TAACATTGCGTTGTTGTGTGTACAA
LOC_Os10g04720
Os.23264.1.A1_at--1113--6011Chr10:2233653..2233677 (25 bp)
GAGAGTATGGTCCTTGATGAGCCTA
LOC_Os10g04720
Os.23264.1.A1_at--1077--5851Chr10:2233635..2233659 (25 bp)
GAGCCTAAGCATCCAGCATATTTCC
LOC_Os10g04720
Os.23264.1.A1_at--797--5231Chr10:2233587..2233611 (25 bp)
GAATCATCCACTGTAGGAACATGTA
LOC_Os10g04720
Os.23264.1.A1_at--592--9871NONE
TACTATCAATGATGTGACCACTAAT
NONE
Target Sequence 
TTCCGAGGGCCTCTTCTCTCCAAAATCTGATGTATTCAGCTTTGGCGTTATAATTCTCGAGATCATTAGCGGAAAAAGAA
ATGCCAGTTTAGATCAATGTGAAGACTTCATCAATCTCCTNGGATATGCATGGAAGTTGTGGTCAGAGGAAAGATGGCTT
GAACTTCTTGATGCATCATTGGTTACAAATTGGCAGTCATCGTGTATGNTGAGGNGCATTAACATTGCGTTGTTGTGTGT
ACAAGAGAATGCAGTTGATCGACCGACCATGTCAAATGTTGTTGCAATGCTAAGTAGTGAGAGTATGGTCCTTGATGAGC
CTAAGCATCCAGCATATTTCCATNTAANNGNNANNANANNNNANGAATCATCCACTGTAGGAACATGTAGTACTATCAAT
GATGTGACCACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23264.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis