Browse Element(s) Details


Os.23301.1.S1_at

Description gb:AK110772.1
DB_XREF= gi:32995981
TID=Os.23301.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-B02, full insert sequence.
FL= gb:AK110772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5666011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
LOC_Os03g56676NANA3+32222755..32226996retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g56682NANA3+32227675..32228405hypothetical protein
LOC_Os03g56690OsAffx.10434.1.S1_at11/113+32230883..32231638hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23301.1.S1_at--378--8771Chr03:32210831..32210992 (25 bp)
TGTATCCAAATGTAGAACCGTCAGG
LOC_Os03g56660
Os.23301.1.S1_at--974--4771Chr03:32211648..32211672 (25 bp)
GCTCCATTTGACTGAAATCACCGCA
LOC_Os03g56660
Os.23301.1.S1_at--416--5591Chr03:32211661..32211685 (25 bp)
GAAATCACCGCAACAAGTTATTGTC
LOC_Os03g56660
Os.23301.1.S1_at--709--10231Chr03:32211679..32211703 (25 bp)
TATTGTCTACTCTCAACCATACTAA
LOC_Os03g56660
Os.23301.1.S1_at--137--4111Chr03:32211695..32211719 (25 bp)
CCATACTAAAGTGTTCAGTACTTCC
LOC_Os03g56660
Os.23301.1.S1_at--1080--5671Chr03:32211761..32211785 (25 bp)
GACATATTATGTCAGCTATTCTTTA
LOC_Os03g56660
Os.23301.1.S1_at--940--4871Chr03:32211775..32211799 (25 bp)
GCTATTCTTTAATTTGTTCCGCTCA
LOC_Os03g56660
Os.23301.1.S1_at--330--9731Chr03:32211784..32211808 (25 bp)
TAATTTGTTCCGCTCACGTTAAATT
LOC_Os03g56660
Os.23301.1.S1_at--770--4471Chr03:32211813..32211837 (25 bp)
GCCTGCACATTTGGCATAGTTTGTT
LOC_Os03g56660
Os.23301.1.S1_at--112--8291Chr03:32211825..32211849 (25 bp)
GGCATAGTTTGTTTGTACTACTGAA
LOC_Os03g56660
Os.23301.1.S1_at--892--6511Chr03:32211867..32211891 (25 bp)
GATATTGATGCACTACGCCTAATTC
LOC_Os03g56660
Target Sequence 
TGTATCCAAATGTAGAACCGTCAGGACTAATCTATGGGCATGTGGTGGAGGCAGACCAGGCCTTTCTCCCAGATAGCCAC
GAACTGGCAAATGCCGACAACCAATTTACTGGAGGTAATGATGATAGTGCTCCATTTGACTGAAATCACCGCAACAAGTT
ATTGTCTACTCTCAACCATACTAAAGTGTTCAGTACTTCCNGTGTGATTATAAGTGTGTAGTAGTTCGTAAATATAGTAG
GGACATATTATGTCAGCTATTCTTTAATTTGTTCCGCTCACGTTAAATTTNCTGCCTGCACATTTGGCATAGTTTGTTTG
TACTACTGAATACTGAGATCAAATATTGATATTGATGCACTACGCCTAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis