Browse Element(s) Details


Os.23384.1.A1_at

Description gb:AY341847.1
DB_XREF= gi:33519181
TID=Os.23384.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23384 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY6 mRNA, complete cds.
PROD=WRKY6
FL= gb:AY341847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4057011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40540Os.47130.4.A1_x_at3/117+24288723..24288980retrotransposon protein, putative, unclassified
LOC_Os07g40550Os.22263.1.S1_a_at11/117+24291094..24297488protein kinase family protein, putative, expressed
LOC_Os07g40560NANA7+24306547..24307191hypothetical protein
LOC_Os07g40570Os.23384.1.A1_at11/117+24310208..24313688WRKY DNA binding domain containing protein, expressed
LOC_Os07g40580Os.6385.1.S1_at11/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40580Os.57480.1.S1_x_at1/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40590Os.31312.1.S1_at6/117+24321692..24325314retrotransposon protein, putative, unclassified
LOC_Os07g40600NANA7+24327386..24328414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23384.1.A1_at--1001--5071Chr07:24312199..24312223 (25 bp)
GCACCATGGTTGCTCCTTTAGTGAA
LOC_Os07g40570
Os.23384.1.A1_at--1106--5911Chr07:24312091..24312115 (25 bp)
GAGCTTCCGGTGATGCCAGTGCAAA
LOC_Os07g40570
Os.23384.1.A1_at--830--8951Chr07:24311956..24311976 (21 bp)
TGAAAGGAATGTGCCAGCCCCAGGT
LOC_Os07g40570
Os.23384.1.A1_at--472--3011Chr07:24310699..24310723 (25 bp)
AATGCACCTACCTAGGCTGTGATGT
LOC_Os07g40570
Os.23384.1.A1_at--722--251Chr07:24310609..24310633 (25 bp)
ATATCCATGATGTGCCTGCTGCAAG
LOC_Os07g40570
Os.23384.1.A1_at--483--9991Chr07:24310567..24310591 (25 bp)
TAGCCAATGCCTCTCTATTGCAGAA
LOC_Os07g40570
Os.23384.1.A1_at--740--3031Chr07:24310513..24310537 (25 bp)
AATCCTACACAACGATCACTTGCTA
LOC_Os07g40570
Os.23384.1.A1_at--142--10731Chr07:24310494..24310518 (25 bp)
TTGCTAGATTCTGCCATACATCCGT
LOC_Os07g40570
Os.23384.1.A1_at--766--331Chr07:24310479..24310503 (25 bp)
ATACATCCGTCTGATTGCTCATATG
LOC_Os07g40570
Os.23384.1.A1_at--817--1611Chr07:24310442..24310466 (25 bp)
AGCTGTGTATTTTATCGGCCGTACC
LOC_Os07g40570
Os.23384.1.A1_at--517--9811Chr07:24310414..24310438 (25 bp)
TAACGAGGCGATTTTTGGCACCATT
LOC_Os07g40570
Target Sequence 
GCACCATGGTTGCTCCTTTAGTGAAAAAGATTGAAGATGGTGATGACCAATTGTCTGGATCAAGTGATAACCAGGATGAG
CATGATGATGAGGTGAGGACTTCTGATGGAGCTTCCGGTGATGCCAGTGCAAATGAAAGGAATGTGCCAGCCCCAGGTCA
AAAGATTATAGTGAGTACAACCAGTGAGATCGATCTTTTGGATGATGGTTATAGGTGGCGAAAATATGGACAGAAAGTGG
TGAAAGGAAATCCTTACCCAAGGAGTTATTACAAATGCACCTACCTAGGCTGTGATGTAAAGAAGCAAGTTGAGAGATCT
GTTGAGGAACCAAATGCTGTGATAACTACATACGAGGGGAAGCATATCCATGATGTGCCTGCTGCAAGGAACAAAAGCCA
TGTCGTAGCCAATGCCTCTCTATTGCAGAACACAAAGTCGAATACCTACNGCACAGAGCAATCCTACACAACGATCACTT
GCTAGATTCTGCCATACATCCGTCTGATTGCTCATATGTAGCATTTCTGAAGCTGTGTATTTTATCGGCCGTACCCACTA
ACGAGGCGATTTTTGGCACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23384.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis