Browse Element(s) Details


Os.23421.1.S1_at

Description gb:AK105512.1
DB_XREF= gi:32990721
TID=Os.23421.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E07, full insert sequence.
FL= gb:AK105512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3890011/11Chorismate mutase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38870Os.16324.1.S1_at11/1112+23859127..23864684expressed protein
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed
LOC_Os12g38890NANA12+23881418..23883176transposon protein, putative, unclassified
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os12g38910Os.53867.1.S1_s_at11/1112+23892149..23895285expressed protein
LOC_Os12g38910Os.53867.1.S1_at11/1112+23892149..23895285expressed protein
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009096biological_processaromatic amino acid family biosynthesis, anthranilate pathway
GO:0009607biological_processresponse to biotic stimulus
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004106molecular_functionchorismate mutase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23421.1.S1_at--455--6231Chr12:23889319..23889343 (25 bp)
GATGGAATTGCTGACGTTCGCGAAG
LOC_Os12g38900
Os.23421.1.S1_at--170--1611Chr12:23889447..23889471 (25 bp)
AGCTGGCCGTGGAGCTGTATGACAA
LOC_Os12g38900
Os.23421.1.S1_at--840--2851Chr12:23889495..23889519 (25 bp)
AAGTGCAAGTGCAGTACCTCCTCAA
LOC_Os12g38900
Os.23421.1.S1_at--53--6991Chr12:23889508..23889532 (25 bp)
GTACCTCCTCAAGAGGCTGGATTGA
LOC_Os12g38900
Os.23421.1.S1_at--1100--4711Chr12:23889523..23889547 (25 bp)
GCTGGATTGAGTTTTGAGCCCCAAC
LOC_Os12g38900
Os.23421.1.S1_at--703--3751Chr12:23889580..23889604 (25 bp)
CTCTCTCCAGTTTCAGTTCTGAACT
LOC_Os12g38900
Os.23421.1.S1_at--722--4531Chr12:23889616..23889640 (25 bp)
GCCCTTATGTTTTGTTTTACCAGAT
LOC_Os12g38900
Os.23421.1.S1_at--1126--10451Chr12:23889632..23889656 (25 bp)
TTACCAGATACTGCTTTGAGTTCAG
LOC_Os12g38900
Os.23421.1.S1_at--101--6911Chr12:23889683..23889707 (25 bp)
GTATCTTCATGTAATCCTGTAGTTG
LOC_Os12g38900
Os.23421.1.S1_at--607--5571Chr12:23889707..23889731 (25 bp)
GAAAGTTCAGTTCTCAGCAGAGCAT
LOC_Os12g38900
Os.23421.1.S1_at--232--1551Chr12:23889727..23889751 (25 bp)
AGCATTTGGTACTGAATTGCAACTT
LOC_Os12g38900
Target Sequence 
GATGGAATTGCTGACGTTCGCGAAGGTGGAGGATGACGTGAGGGCCCGCGTGATGAGCAAGGCCATGACCTTNGGCCAGG
TGGTGAGTGAAGATCTGGAGAACGAAATTAAGCTCAAGATCGAGCCGGAGCTGGCCGTGGAGCTGTATGACAAGTGGATC
ATGCCACTGACCAAGGAAGTGCAAGTGCAGTACCTCCTCAAGAGGCTGGATTGAGTTTTGAGCCCCAACTATCCTTTGCC
TGTCCATNTACNAGATGCTCTCTCTCTCCAGTTTCAGTTCTGAACTTGAATAATTAGGCCCTTATGTTTTGTTTTACCAG
ATACTGCTTTGAGTTCAGTTTTAGTTTCNGTAGTTTGCAGTTTNGTATCTTCATGTAATCCTGTAGTTGAAAGTTCAGTT
CTCAGCAGAGCATTTGGTACTGAATTGCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis