Browse Element(s) Details


Os.2344.1.S1_at

Description gb:AF193345.1
DB_XREF= gi:6319145
TID=Os.2344.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2344 (NCBI UniGene Cluster)
DEF=Oryza sativa H2A protein mRNA, complete cds.
PROD=H2A protein
FL= gb:AF193345.1 gb:AK121515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2823010/11Histone H2A variant, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28210Os.50013.1.S1_at11/1110+14328215..14330029uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os10g28219OsAffx.20345.1.S1_x_at11/1110+14334033..14334329NA
LOC_Os10g28230Os.2344.1.S1_at10/1110+14348672..14349971Histone H2A variant, putative, expressed
LOC_Os10g28240Os.46832.1.S1_at11/1110+14352601..14355971Calcium-transporting ATPase 13, plasma membrane-type, putative, expressed
LOC_Os10g28250OsAffx.25007.2.S1_s_at9/1110+14357843..14359102retrotransposon protein, putative, LINE subclass
LOC_Os10g28260OsAffx.30567.1.S1_at10/1110+14372648..14373672hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2344.1.S1_at--624--3931Chr10:14349677..14349701 (25 bp)
CGGCGGCTATGTGTTCTTGGAAGTT
LOC_Os10g28230
Os.2344.1.S1_at--999--2071Chr10:14349738..14349762 (25 bp)
AAATCCCAGTTATCTTTTCACTAGT
LOC_Os10g28230
Os.2344.1.S1_at--874--8111Chr10:14349778..14349802 (25 bp)
GGACTTGTTGTTATGGTGATTACCT
LOC_Os10g28230
Os.2344.1.S1_at--139--6551Chr10:14349795..14349819 (25 bp)
GATTACCTGAATTAGGTGTTCCTGA
LOC_Os10g28230
Os.2344.1.S1_at--363--7411Chr10:14349810..14349834 (25 bp)
GTGTTCCTGAATCTGTGTAATGGCT
LOC_Os10g28230
Os.2344.1.S1_at--988--2951Chr10:14349828..14349852 (25 bp)
AATGGCTGGCTAAACCTTTGGTAAT
LOC_Os10g28230
Os.2344.1.S1_at--1151--2751Chr10:14349868..14349892 (25 bp)
AAGACTTGACTTGCAGCAGCTTGGT
LOC_Os10g28230
Os.2344.1.S1_at--377--3411Chr10:14349881..14349905 (25 bp)
CAGCAGCTTGGTGTAGTTGTGATGT
LOC_Os10g28230
Os.2344.1.S1_at--4--3851Chr10:14349910..14349934 (25 bp)
CTGCTTATATTTTTCTCTCTGTTGG
LOC_Os10g28230
Os.2344.1.S1_at--688--9511Chr10:14349923..14349947 (25 bp)
TCTCTCTGTTGGGTGACTAGCTAAT
LOC_Os10g28230
Os.2344.1.S1_at--821--4931Chr10:14349948..14349972 (25 bp)
GCTTGGTTGTTACTTGTTGATGACA
NONE
Target Sequence 
CGGCGGCTATGTGTTCTTGGAAGTTTTCTATGACNTCTCTGCTAGGGGATTAGTGAGAAAAAAATCCCAGTTATCTTTTC
ACTAGTAGTCTTAATCATTTAGGACTTGTTGTTATGGTGATTACCTGAATTAGGTGTTCCTGAATCTGTGTAATGGCTGG
CTAAACCTTTGGTAATTTGGTGGTAGGGCTGAAGACTTGACTTGCAGCAGCTTGGTGTAGTTGTGATGTGAAACTGCTTA
TATTTTTCTCTCTGTTGGGTGACTAGCTAATGCTTGGTTGTTACTTGTTGATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis