Browse Element(s) Details


Os.2345.2.S1_a_at

Description gb:AY551912.1
DB_XREF= gi:45385945
TID=Os.2345.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2345 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS206 mRNA, complete cds.
PROD=MADS-box protein RMADS206
FL= gb:AY551912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1054010/11Floral homeotic protein AGAMOUS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10490NANA12+5557123..5558779hypothetical protein
LOC_Os12g10500NANA12+5559581..5563927retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10510Os.53196.1.S1_at10/1112+5567824..5572417expressed protein
LOC_Os12g10520Os.48782.1.S1_at11/1112+5568630..5572009Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os12g10530NANA12+5576941..5577543hypothetical protein
LOC_Os12g10540Os.2345.2.S1_a_at10/1112+5583729..5589271Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os12g10550Os.20294.1.S1_at11/1112+5595768..5597853transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g10560Os.9377.1.S1_at11/1112+5601182..5605132Clathrin coat assembly protein AP17, putative, expressed
LOC_Os12g10570OsAffx.30475.5.S1_x_at11/1112+5611052..5612326ATP synthase beta chain, putative
LOC_Os12g10580OsAffx.26050.2.S2_x_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.26050.37.S1_s_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32219.1.S1_x_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32220.1.S1_s_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010047biological_processfruit dehiscence
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048481biological_processovule development
GO:0048497biological_processmaintenance of floral organ identity
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2345.2.S1_a_at--907--2731Chr12:5586950..5586974 (25 bp)
AAGAAGGCGCATGCTTGTGGCTCAA
LOC_Os12g10540
Os.2345.2.S1_a_at--698--631Chr12:5586960..5586984 (25 bp)
ATGCTTGTGGCTCAACTTCTGGTGC
LOC_Os12g10540
Os.2345.2.S1_a_at--36--2531Chr12:5586973..5586997 (25 bp)
AACTTCTGGTGCACCTCTCATAGAG
LOC_Os12g10540
Os.2345.2.S1_a_at--1020--3011NONE
AATGCTCAGCAATACTACCAGCAGG
NONE
Os.2345.2.S1_a_at--641--2451Chr12:5587870..5587889 (20 bp)
AACAAGCACCTGGTTGGCGATAATG
LOC_Os12g10540
Os.2345.2.S1_a_at--867--751Chr12:5587887..5587911 (25 bp)
ATGTGAGCAACCTGTCACTGAAGGA
LOC_Os12g10540
Os.2345.2.S1_a_at--1092--5371Chr12:5587915..5587939 (25 bp)
GAAGCAACTTGAAAGCCGCCTGGAG
LOC_Os12g10540
Os.2345.2.S1_a_at--81--10551Chr12:5588780..5588804 (25 bp)
TTCTTCCCGTTGAACCTGTTCGAGG
LOC_Os12g10540
Os.2345.2.S1_a_at--435--3751Chr12:5588925..5588949 (25 bp)
CTCACTTCTGAACCTCATGAACTTC
LOC_Os12g10540
Os.2345.2.S1_a_at--396--4831Chr12:5588987..5589011 (25 bp)
GCTCATCTTCTATATCTTATGCTGT
LOC_Os12g10540
Os.2345.2.S1_a_at--572--5651Chr12:5589018..5589042 (25 bp)
GACAGACACTACTGATGTGGCTATA
LOC_Os12g10540
Target Sequence 
AAGAAGGCGCATGCTTGTGGCTCAACTTCTGGTGCACCTCTCATAGAGGTCAATGCTCAGCAATACTACCAGCAGGAGTC
TGCCAAACTGCGCCACCAGATTCAGATGCTGCAAAACACCAACAAGCACCTGGTTGGCGATAATGTGAGCAACCTGTCAC
TGAAGGAGCTGAAGCAACTTGAAAGCCGCCTGGAGAAAGGCATTTCAAAGATCAGAGCCAGGAAGCTGGACATGAAGTGC
TTCTTCCCGTTGAACCTGTTCGAGGCGGCGGCGCAGGTGCAGGCCGTGGCGGCGCAGCGCCAGCAGATCATCCCCACCGA
GCTCAACCTCGGCTACCACCACCACCTTGCCATTCCCGGCGCCGCCGCCGCCGACGCGCCGCCTCCTCACTTCTGAACCT
CATGAACTTCATTCTGCACCGGCCTGCTGCCATGGATATGATGATCAGCTCATCTTCTATATCTTATGCTGTTATGCAGA
CAGACACTACTGATGTGGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2345.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis