Browse Element(s) Details


Os.23474.1.A1_at

Description gb:AK070522.1
DB_XREF= gi:32980546
TID=Os.23474.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056J16, full insert sequence.
FL= gb:AK070522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5333011/11RRM-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53280Os.10703.2.S1_x_at1/114+31514970..31521059retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53290Os.55517.1.S1_x_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53290OsAffx.14394.1.S1_at1/114+31521750..31522385Polyphenol oxidase I, chloroplast, putative
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23474.1.A1_at--93--551Chr04:31545524..31545548 (25 bp)
ATCCCAACAGCCCATGCGCAAGAAA
LOC_Os04g53330
Os.23474.1.A1_at--939--7991Chr04:31545465..31545489 (25 bp)
GGAGGCTGATTTACCTAAGGCCGAT
LOC_Os04g53330
Os.23474.1.A1_at--151--2771Chr04:31545451..31545475 (25 bp)
CTAAGGCCGATATACCTGGAAGTTT
LOC_Os04g53330
Os.23474.1.A1_at--376--3911Chr04:31545436..31545460 (25 bp)
CTGGAAGTTTCACGATGGCCGCGAA
LOC_Os04g53330
Os.23474.1.A1_at--8--931Chr04:31545398..31545422 (25 bp)
AGGAACCCGTACAGCGAATTGTCGA
LOC_Os04g53330
Os.23474.1.A1_at--965--5191Chr04:31545383..31545407 (25 bp)
GAATTGTCGAAAACCCATATCCCAG
LOC_Os04g53330
Os.23474.1.A1_at--8--231Chr04:31545367..31545391 (25 bp)
ATATCCCAGGAAGCCCTGCAACGAT
LOC_Os04g53330
Os.23474.1.A1_at--115--7532Chr04:31545192..31545216 (25 bp)
GTGGAACTTGCCATCTTTCAGATAT
LOC_Os04g53330
Os.23474.1.A1_at--272--6511Chr04:31545172..31545196 (25 bp)
GATATCGTTCACAATTGTTTCCAGA
LOC_Os04g53330
Os.23474.1.A1_at--1033--6811Chr04:31545114..31545138 (25 bp)
GTTTTTGTGCAGTTTTGGTCCACAT
LOC_Os04g53330
Os.23474.1.A1_at--661--7271Chr04:31545097..31545121 (25 bp)
GTCCACATTTGTATTCTAGGTCCCT
LOC_Os04g53330
Target Sequence 
ATCCCAACAGCCCATGCGCAAGAAAATGCCCAAATAACCGGGAAGGAGCATAAGCATCAGGAGGCTGATTTACCTAAGGC
CGATATACCTGGAAGTTTCACGATGGCCGCGAAAAGTGAAAAGCACAGGAACCCGTACAGCGAATTGTCGAAAACCCATA
TCCCAGGAAGCCCTGCAACGATTCCTGTNTGCACGGCCNCTACTGATGTGAACAGTACCAAAACTCCAAAGAAGCCAGAG
AATGCCGAGGGATTCATNTGATGATGTGTTCGATTCAAAGAATGTAAATATGGATGTGGGATGCCGGTGATGTTTTTGAT
TCAGCTTATAATGTGGAACTTGCCATCTTTCAGATATCGTTCACAATTGTTTCCAGATTTTAAGATTGTAATGATCACCN
TTTCGTTACTGTTTTTGTGCAGTTTTGGTCCACATTTGTATTCTAGGTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23474.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis