Browse Element(s) Details


Os.23476.1.A1_at

Description gb:AK111570.1
DB_XREF= gi:37988233
TID=Os.23476.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071C24, full insert sequence.
FL= gb:AK111570.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g415108/11Calcineurin B-like protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41460NANA1+23799067..23801318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41470NANA1+23805826..23807071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41480NANA1+23809263..23811906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41490OsAffx.8172.1.S1_at1/111+23812137..23813733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g41500NANA1+23814571..23817473retrotransposon protein, putative, unclassified
LOC_Os01g41510Os.23476.1.A1_at8/111+23825291..23829223Calcineurin B-like protein 4, putative, expressed
LOC_Os01g41516OsAffx.19542.3.S1_x_at5/111+23830700..23832493retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g41522NANA1+23833497..23834608retrotransposon protein, putative, unclassified
LOC_Os01g41530Os.56319.1.S1_at11/111+23836946..23839191F-box domain containing protein, expressed
LOC_Os01g41540OsAffx.2206.1.S1_at11/111+23840209..23840782hypothetical protein
LOC_Os01g41550Os.13623.1.S1_at9/111+23841856..23843623Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g41560OsAffx.23622.1.S1_at11/111+23849278..23850404hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006499biological_processN-terminal protein myristoylation
GO:0006950biological_processresponse to stress
GO:0019722biological_processcalcium-mediated signaling
GO:0030007biological_processpotassium ion homeostasis
GO:0042539biological_processhypotonic salinity response
GO:0005955cellular_componentcalcineurin complex
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23476.1.A1_at--718--6491Chr01:23828456..23828570 (25 bp)
GATAGGACATTTGACCAGGCTGACA
LOC_Os01g41510
Os.23476.1.A1_at--117--7311Chr01:23828633..23828657 (25 bp)
GTGCTGAGGAATATGACCCTCCCAT
LOC_Os01g41510
Os.23476.1.A1_at--828--2911NONE
AAGGACCTCACCATGGTATTCCCAA
NONE
Os.23476.1.A1_at--365--7871Chr01:23828953..23828977 (25 bp)
GGTATTCCCAAGTTTTGTGATTCAC
LOC_Os01g41510
Os.23476.1.A1_at--930--1511Chr01:23828992..23829016 (25 bp)
AGCAGACATGGTTGCCTAACCTGAA
LOC_Os01g41510
Os.23476.1.A1_at--759--3731Chr01:23829012..23829036 (25 bp)
CTGAAACCTGGTGTTGCTACTTGCT
LOC_Os01g41510
Os.23476.1.A1_at--809--5171Chr01:23829042..23829066 (25 bp)
GCAAGTTTGCAACACTTCTAGCATG
LOC_Os01g41510
Os.23476.1.A1_at--792--751Chr01:23829064..23829088 (25 bp)
ATGTAATGTTTGTTCCTTGCGTGCA
LOC_Os01g41510
Os.23476.1.A1_at--602--3631Chr01:23829079..23829103 (25 bp)
CTTGCGTGCATTGTTGACTAGGGAA
LOC_Os01g41510
Os.23476.1.A1_at--586--5491Chr01:23835693..23835717 (25 bp)
GAACAGTTTTTCAAGGCCATCAATG
NONE
Os.23476.1.A1_at--746--7071Chr01:23835750..23835774 (25 bp)
GTAATTTCGTAGCAACTTCACATGG
NONE
Target Sequence 
GATAGGACATTTGACCAGGCTGACACAAAAGGCGATGAGAGAATAGACCAGGAGGAGTGGAATGAGTTTGTCAAAAATAA
TCCATATGTGCTGAGGAATATGACCCTCCCATACCTCAAGGACCTCACCATGGTATTCCCAAGTTTTGTGATTCACTCAG
AAGTCAGCGAAGCAGACATGGTTGCCTAACCTGAAACCTGGTGTTGCTACTTGCTAGATTGCAAGTTTGCAACACTTCTA
GCATGTAATGTTTGTTCCTTGCGTGCATTGTTGACTAGGGAAACAGCCATATAGGAGATGAGTTGATGCCTCAAAATGTA
GCATCACTGACCAGCAGATGCTCACNNNTGNNNNNNNNNNNNTANNNTNNNNNAANNNANNCNNTNNNNNNNTNNNNNNN
NNATATAGTACAGCCATGGAAGGTGTTGGGTGCGGCTTTGCATGACAAGTGAACAGTTTTTCAAGGCCATCAATGGAAGT
GAGGGTAATCACAGTTGAAGGCTCACAGTAATTTCGTAGCAACTTCACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23476.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis