Browse Element(s) Details


Os.23498.1.S1_at

Description gb:AK071017.1
DB_XREF= gi:32981040
TID=Os.23498.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080J04, full insert sequence.
FL= gb:AK071017.1 gb:AK059879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6996011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23498.1.S1_at--480--1951Chr01:40787732..40787756 (25 bp)
ACTGGCTCACTGCACTGTAGGAGAT
LOC_Os01g69960
Os.23498.1.S1_at--552--10131Chr01:40787757..40787781 (25 bp)
TATGCATGCACCCTTTTGATTAGAG
LOC_Os01g69960
Os.23498.1.S1_at--505--8851Chr01:40787788..40787812 (25 bp)
TGATGATCTGATCCGGTTTAGCCAT
LOC_Os01g69960
Os.23498.1.S1_at--332--2871Chr01:40787887..40787911 (25 bp)
AAGTGATGCATGTGTCTTTCTCTTA
LOC_Os01g69960
Os.23498.1.S1_at--99--6231Chr01:40787983..40788007 (25 bp)
GAGGCCAAGTACACTCAACCTGATC
LOC_Os01g69960
Os.23498.1.S1_at--487--6451Chr01:40788004..40788028 (25 bp)
GATCACCTCTCAGTTGTCGGGATAA
LOC_Os01g69960
Os.23498.1.S1_at--159--2391Chr01:40788088..40788112 (25 bp)
AAACGTTTTCTTAAGCAGCTGGCAC
LOC_Os01g69960
Os.23498.1.S1_at--1089--251Chr01:40788117..40788141 (25 bp)
ATATGTGCCCGGTCAACTCAGTTTT
LOC_Os01g69960
Os.23498.1.S1_at--191--6551Chr01:40788245..40788269 (25 bp)
GATTTTGGATCGTTCCTAATGCAAA
LOC_Os01g69960
Os.23498.1.S1_at--21--6051Chr01:40788275..40788299 (25 bp)
GAGATCTGCAATTTGTTTCAAGGAA
LOC_Os01g69960
Os.23498.1.S1_at--904--10471Chr01:40788308..40788332 (25 bp)
TTAATAAAACCTCTCGTATCTATGC
LOC_Os01g69960
Target Sequence 
ACTGGCTCACTGCACTGTAGGAGATTATGCATGCACCCTTTTGATTAGAGTGTGTCTGATGATCTGATCCGGTTTAGCCA
TGCNCAAGAATTAGGCAGAGAAAAAAAGAGAGNCAAGGAATGTGTGTGTGATCTTTTGAAAAAGCAGAAAAAGAAAAGTG
ATGCATGTGTCTTTCTCTTANCNANNNTTGCTTTGAGCCTAATTGCATATGTAATGNCGCAATTATTACATCACTTATCC
TGAGGAACAATGAGGCCAAGTACACTCAACCTGATCACCTCTCAGTTGTCGGGATAACAAAGTTGCTCAACACAAACAGT
GCAAGGCAAAAGCTTAGCATTTTTGTGATTTTTCTGAAACGTTTTCTTAAGCAGCTGGCACATAAATATGTGCCCGGTCA
ACTCAGTTTTCTTTTCCTTTTTGGAAGGCAGCTAGCAAAATTTGATAGTAATTCGATTTCCAAATTCCTGCAACTTATAT
TAATTGCAAATAGTTTTTTTAAAAAAAACATCAGATTTTGGATCGTTCCTAATGCAAAATATTGAGATCTGCAATTTGTT
TCAAGGAACCTTAGATTTAATAAAACCTCTCGTATCTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis