Browse Element(s) Details


Os.23529.1.A1_at

Description gb:AK120841.1
DB_XREF= gi:37990464
TID=Os.23529.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022G19, full insert sequence.
FL= gb:AK120841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4271011/11Elicitor-responsive protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein
LOC_Os02g42740Os.52752.1.S1_at10/112+25691080..25692876Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os02g42750NANA2+25703665..25709364retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23529.1.A1_at--850--7451Chr02:25679648..25679672 (25 bp)
GTGTCTGACAAAGCTACAGAGCTGT
LOC_Os02g42710
Os.23529.1.A1_at--987--5891Chr02:25679666..25679690 (25 bp)
GAGCTGTTGATCAAGCTCTTGGACA
LOC_Os02g42710
Os.23529.1.A1_at--340--8131Chr02:25679686..25679710 (25 bp)
GGACAGTGATACTGGCTCAGCCGAC
LOC_Os02g42710
Os.23529.1.A1_at--426--3751Chr02:25679701..25679725 (25 bp)
CTCAGCCGACGACTTTGTTGGTGAA
LOC_Os02g42710
Os.23529.1.A1_at--944--5151Chr02:25679874..25679893 (20 bp)
GCAACGATTCCTTTGGAAGCAGTGT
LOC_Os02g42710
Os.23529.1.A1_at--4--5991Chr02:25679954..25679978 (25 bp)
GAGAAATCAAAGTCGGCCTCACATT
LOC_Os02g42710
Os.23529.1.A1_at--974--4291Chr02:25679970..25680363 (25 bp)
CCTCACATTCACTCCTGAGGATGTT
LOC_Os02g42710
Os.23529.1.A1_at--738--4411Chr02:25680894..25680918 (25 bp)
GCCAGCGTGGTCTTCCTGAGGACTT
LOC_Os02g42710
Os.23529.1.A1_at--355--8611Chr02:25680919..25680943 (25 bp)
TGGTGGATGGAAGCAATCTCGTTAA
LOC_Os02g42710
Os.23529.1.A1_at--923--6331Chr02:25680952..25680976 (25 bp)
GATGCTTTCAGGTTTCTACAGTACT
LOC_Os02g42710
Os.23529.1.A1_at--307--10111Chr02:25681177..25681201 (25 bp)
TATGTAATACGGTTTGTTGCTACTT
LOC_Os02g42710
Target Sequence 
GTGTCTGACAAAGCTACAGAGCTGTTGATCAAGCTCTTGGACAGTGATACTGGCTCAGCCGACGACTTTGTTGGTGAAGC
AACGATTCCTTTGGAAGCAGTGTATACTGAAGGGAGTATTCCNCCAACTCTGTATAATGTTGTGAAGGATGAACATTNCT
GTGGAGAAATCAAAGTCGGCCTCACATTCACTCCTGAGGATGTTNGCCAGCGTGGTCTTCCTGAGGACTTTGGTGGATGG
AAGCAATCTCGTTAAGAAAANCAGATGCTTTCAGGTTTCTACAGTACTATCATAAGTTTGTTCATCAAGACTTGAAACCC
TGAATTTNCATGTCAGTTTATCAGGNTTCGTCAATCATGTTTTTTTAGGGAAAAGAANAGGATATTTGAGGGAAACTTTG
TCAATCATGTTNAAAAAAAAGTATTATTTGTCTAAAGATAGCTTTGATTTAGGNTGTTGNTATACTTTCTTAATTATTAC
TNCNAAATTATATGTAATACGGTTTGTTGCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23529.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis