Browse Element(s) Details


Os.52752.1.S1_at

Description gb:AK069079.1
DB_XREF= gi:32979103
TID=Os.52752.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023006E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006E15, full insert sequence.
FL= gb:AK069079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4274010/11Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein
LOC_Os02g42740Os.52752.1.S1_at10/112+25691080..25692876Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os02g42750NANA2+25703665..25709364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g42760NANA2+25712955..25714013hypothetical protein
LOC_Os02g42770Os.51348.1.S1_x_at3/112+25714631..25716884retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0030308biological_processnegative regulation of cell growth
GO:0005886cellular_componentplasma membrane
GO:0005496molecular_functionsteroid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52752.1.S1_at--809--8531Chr02:25691644..25691668 (25 bp)
TGGAGCTACAAGTCATGCAGATGCA
LOC_Os02g42740
Os.52752.1.S1_at--144--411Chr02:25691611..25691635 (25 bp)
ATCAGATGCTGATGTGAGCACACAC
LOC_Os02g42740
Os.52752.1.S1_at--963--4751Chr02:25691554..25691578 (25 bp)
GCTGCTGGAATCAGGTGTGGATACT
LOC_Os02g42740
Os.52752.1.S1_at--390--7951Chr02:25691536..25691560 (25 bp)
GGATACTAGAAGCACCCATGAAGAT
LOC_Os02g42740
Os.52752.1.S1_at--973--5491Chr02:25691407..25691431 (25 bp)
GAACACGTGCAGTCTGGAAGACGCA
LOC_Os02g42740
Os.52752.1.S1_at--661--9851Chr02:25691341..25691365 (25 bp)
TACAAGCGGCCATGAAGTTGCTGGA
LOC_Os02g42740
Os.52752.1.S1_at--148--8011Chr02:25691293..25691317 (25 bp)
GGATGGGAACAATACAAGCAGCAAT
LOC_Os02g42740
Os.52752.1.S1_at--1071--2631Chr02:25691147..25691171 (25 bp)
AACCAGCAGGTGAGCTCTGTTGGGT
LOC_Os02g42740
Os.52752.1.S1_at--225--7771Chr02:25691139..25691163 (25 bp)
GGTGAGCTCTGTTGGGTTGAATCTT
LOC_Os02g42740
Os.52752.1.S1_at--603--7511Chr02:25691106..25691130 (25 bp)
GTGGAAATACCACTATAATGCAATA
LOC_Os02g42740
Os.52752.1.S1_at--833--5271Chr02:25691080..25691104 (25 bp)
GAATGTAATAAGCTTGCGCTGGTCC
NONE
Target Sequence 
TGGAGCTACAAGTCATGCAGATGCAGTGGAAAAATCAGATGCTGATGTGAGCACACACANCCACGAGGATGTTGTAGAGA
AGTCGGATGAGCTGCTGGAATCAGGTGTGGATACTAGAAGCACCCATGAAGATGCAGTGGGGAAGCCAAAGGAAGAAACA
NAAGANGCAGATGTNCAGAAAACGATCAGCACTGAAGTTGCAGGTGAGGGAAAGGGAGCACCTGATGAAGATGANAGGAA
CACGTGCAGTCTGGAAGACGCAATTGAGAAGCCAAAGGAAACGGCATACATTNGATGTGAAGGATACAAGCGGCCATGAA
GTTGCTGGAGAACCAAAGGAAGCACCAGATGNTGGATGGGAACAATACAAGCAGCAATCAAGNATGGCAGTGGATGAGCC
GAAGGNAAGCGTCACATGAAGCGAAGGNAAGCGTAGAGTTGAGGCTATTNGNTGTGATAATATCTGCAGGTAGTTAGCAT
AATNACAGTGNTTGAATCAACAGAGAACCAGCAGGTGAGCTCTGTTGGGTTGAATCTTTGTGTAGTGTGGAAATACCACT
ATAATGCAATAAGAATGTAATAAGCTTGCGCTGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis