Browse Element(s) Details


Os.49563.1.S1_at

Description gb:AK105980.1
DB_XREF= gi:32991189
TID=Os.49563.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F11, full insert sequence.
FL= gb:AK105980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4269011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein
LOC_Os02g42740Os.52752.1.S1_at10/112+25691080..25692876Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0045045biological_processsecretory pathway
GO:0016020cellular_componentmembrane
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49563.1.S1_at--433--3591Chr02:25665728..25665752 (25 bp)
CATTTTGCAGAGATGCAGCATGCCA
LOC_Os02g42690
Os.49563.1.S1_at--638--10211Chr02:25665725..25665749 (25 bp)
TTTGCAGAGATGCAGCATGCCATTT
LOC_Os02g42690
Os.49563.1.S1_at--767--6032Chr07:14946129..14946151 (22 bp)
GAGATGCAGCATGCCATTTTGCGCA
NONE
Os.49563.1.S1_at--545--652Chr07:14946129..14946151 (22 bp)
ATGCAGCATGCCATTTTGCGCACAT
NONE
Os.49563.1.S1_at--847--5051Chr02:25665714..25665738 (25 bp)
GCAGCATGCCATTTTGCGCACATCA
LOC_Os02g42690
Os.49563.1.S1_at--6--1531Chr02:25665712..25665736 (25 bp)
AGCATGCCATTTTGCGCACATCAGT
LOC_Os02g42690
Os.49563.1.S1_at--419--4991Chr02:25665711..25665735 (25 bp)
GCATGCCATTTTGCGCACATCAGTG
LOC_Os02g42690
Os.49563.1.S1_at--1144--4431Chr02:25665707..25665731 (25 bp)
GCCATTTTGCGCACATCAGTGTTAA
LOC_Os02g42690
Os.49563.1.S1_at--236--3591Chr02:25665705..25665729 (25 bp)
CATTTTGCGCACATCAGTGTTAAAC
LOC_Os02g42690
Os.49563.1.S1_at--502--10711Chr02:25665701..25665725 (25 bp)
TTGCGCACATCAGTGTTAAACAAGT
LOC_Os02g42690
Os.49563.1.S1_at--689--9631Chr02:25665692..25665716 (25 bp)
TCAGTGTTAAACAAGTGAGACCATT
LOC_Os02g42690
Target Sequence 
CATTTTGCAGAGATGCAGCATGCCATTTTGCGCACATCAGTGTTAAACAAGTGAGACCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis