Browse Element(s) Details


Os.54055.1.S1_at

Description gb:AK101596.1
DB_XREF= gi:32986805
TID=Os.54055.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051G14, full insert sequence.
FL= gb:AK101596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g426407/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54055.1.S1_at--1133--7011Chr02:25641796..25641820 (25 bp)
GTACATAGACTGCTCGTTGTCTCCG
LOC_Os02g42640
Os.54055.1.S1_at--460--6071Chr02:25641824..25641848 (25 bp)
GAGTTCTTGCTTCGCTCCATCAGGG
LOC_Os02g42640
Os.54055.1.S1_at--903--9231Chr02:25641839..25641863 (25 bp)
TCCATCAGGGCGCAGCTCAAGGGCA
LOC_Os02g42640
Os.54055.1.S1_at--1096--1871Chr02:25641960..25641984 (25 bp)
ACGAGGACTCACCTTTTGGGCGTGC
LOC_Os02g42640
Os.54055.1.S1_at--1065--912Chr02:25642086..25642110 (25 bp)
AGGCTCTTGCGCACCGAGTCGGGTA
LOC_Os02g42640
Os.54055.1.S1_at--224--4571Chr02:25642137..25642161 (25 bp)
GCGCGCTAACCGGAGTCGTGAGCTT
LOC_Os02g42640
Os.54055.1.S1_at--691--4911Chr02:25642158..25642182 (25 bp)
GCTTCGGAGATGTACTTGCGGTGCT
LOC_Os02g42640
Os.54055.1.S1_at--903--2231Chr02:25642286..25642310 (25 bp)
AAATTTGGCCCATGAGCCACGGACT
NONE
Os.54055.1.S1_at--753--1691Chr02:25642300..25642324 (25 bp)
AGCCACGGACTTCCTTTTCTCGAGT
NONE
Os.54055.1.S1_at--1045--10291Chr02:25642315..25642339 (25 bp)
TTTCTCGAGTCCAGCCCGTAAAAGA
NONE
Os.54055.1.S1_at--494--9811Chr02:25642333..25642357 (25 bp)
TAAAAGAGCATTTAGGCCCAAACCT
NONE
Target Sequence 
GTACATAGACTGCTCGTTGTCTCCGCCGGAGTTCTTGCTTCGCTCCATCAGGGCGCAGCTCAAGGGCAGGGGCATGGACG
CCATGGCCGACCTCATGGACGCCGCGGACGACGCTGCCTCGTCTCTGCCGTTATCCCCATCGTCTTCCTCGTCGGCATCG
TCCGACGAGGACTCACCTTTTGGGCGTGCGCGGCGCGCAAGGAGGTCGTCGTCGGGAAGCTTCAGGTGGAGGTCGACGAA
GGACGTCGCCGCATGCCATGCTGGGAGCTCGCTGGTGGCAGTCATGGCGCAGGCTCTTGCGCACCGAGTCGGGTACGTCT
GGGTCGTCGACGAGGTCAGCGGCGCGCTAACCGGAGTCGTGAGCTTCGGAGATGTACTTGCGGTGCTCCGGGAGCATCTC
CGTGATGGTGATACGCAGATGAACTGACGAATTAGCAGTTCATTTGCAGTTTTGCACATGTGCAAGTGTAAATTACACGA
GACATGAGATAAATTTGGCCCATGAGCCACGGACTTCCTTTTCTCGAGTCCAGCCCGTAAAAGAGCATTTAGGCCCAAAC
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis