Browse Element(s) Details


Os.20037.2.A1_at

Description gb:AK103219.1
DB_XREF= gi:32988428
TID=Os.20037.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122O03, full insert sequence.
FL= gb:AK103219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4259011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20037.2.A1_at--289--3471Chr02:25618896..25618920 (25 bp)
CAGTGGGCGTGTGGTGAAATTCTTT
LOC_Os02g42590
Os.20037.2.A1_at--456--3671Chr02:25618917..25618941 (25 bp)
CTTTACATTGAATTTGTGGTGTCAT
LOC_Os02g42590
Os.20037.2.A1_at--799--8731Chr02:25618936..25618960 (25 bp)
TGTCATGGAGTTCTGAGCTTGCGAT
LOC_Os02g42590
Os.20037.2.A1_at--968--3491Chr02:25618939..25618963 (25 bp)
CATGGAGTTCTGAGCTTGCGATACT
LOC_Os02g42590
Os.20037.2.A1_at--345--8551Chr02:25618941..25618965 (25 bp)
TGGAGTTCTGAGCTTGCGATACTTA
LOC_Os02g42590
Os.20037.2.A1_at--1159--6051Chr02:25618943..25618967 (25 bp)
GAGTTCTGAGCTTGCGATACTTAAC
LOC_Os02g42590
Os.20037.2.A1_at--1059--9471Chr02:25618947..25618971 (25 bp)
TCTGAGCTTGCGATACTTAACTGTT
LOC_Os02g42590
Os.20037.2.A1_at--137--5931Chr02:25618950..25618974 (25 bp)
GAGCTTGCGATACTTAACTGTTTAA
LOC_Os02g42590
Os.20037.2.A1_at--44--9811Chr02:25618964..25618988 (25 bp)
TAACTGTTTAAGCTTCTATCATATG
LOC_Os02g42590
Os.20037.2.A1_at--252--2711Chr02:25618973..25618997 (25 bp)
AAGCTTCTATCATATGCTATTGGAA
LOC_Os02g42590
Os.20037.2.A1_at--678--3691Chr02:25618979..25619003 (25 bp)
CTATCATATGCTATTGGAAATTGGA
LOC_Os02g42590
Target Sequence 
CAGTGGGCGTGTGGTGAAATTCTTTACATTGAATTTGTGGTGTCATGGAGTTCTGAGCTTGCGATACTTAACTGTTTAAG
CTTCTATCATATGCTATTGGAAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20037.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis