Browse Element(s) Details


Os.20037.1.S1_x_at

Description gb:AK111517.1
DB_XREF= gi:37988180
TID=Os.20037.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G07, full insert sequence.
FL= gb:AK111517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4259011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20037.1.S1_x_at--908--8611Chr02:25618307..25618331 (25 bp)
TGGTGATACATCTGCGACTTGGTCT
LOC_Os02g42590
Os.20037.1.S1_x_at--428--10071Chr02:25618370..25618394 (25 bp)
TAGTGCCAGCCATCCTATGGAGGGA
LOC_Os02g42590
Os.20037.1.S1_x_at--31--1271Chr02:25618394..25618418 (25 bp)
AGATCAAGCTCCGAGTCATTCGGCC
LOC_Os02g42590
Os.20037.1.S1_x_at--135--7091Chr02:25618434..25618458 (25 bp)
GTCACAGCAGGCCATGAGGGTCATA
LOC_Os02g42590
Os.20037.1.S1_x_at--201--5471Chr02:25618462..25618486 (25 bp)
GAACATTTCAGAACTTCGGCTTTCC
LOC_Os02g42590
Os.20037.1.S1_x_at--611--10611Chr02:25618476..25618500 (25 bp)
TTCGGCTTTCCCGTTAGAGTATAGC
LOC_Os02g42590
Os.20037.1.S1_x_at--951--611Chr02:25618513..25618537 (25 bp)
ATGCTGAGTCATCCTGCAGGAGTGT
LOC_Os02g42590
Os.20037.1.S1_x_at--54--6531Chr02:25618605..25618629 (25 bp)
GATTTGGTTGCTCCTTGGTGCGCCT
LOC_Os02g42590
Os.20037.1.S1_x_at--319--7791Chr02:25618621..25618645 (25 bp)
GGTGCGCCTGCTTCAGAATTTGGAA
LOC_Os02g42590
Os.20037.1.S1_x_at--662--2771Chr02:25618740..25618764 (25 bp)
AAGAGTAATGCTGTCCGCTGGTTGG
LOC_Os02g42590
Os.20037.1.S1_x_at--631--8551Chr02:25618758..25618782 (25 bp)
TGGTTGGAGTGACATCTTTCGCCCT
LOC_Os02g42590
Target Sequence 
TGGTGATACATCTGCGACTTGGTCTGAAGAACTCATGACACCAACAAAACAGAGCCCGCGGTCTAGTGCCAGCCATCCTA
TGGAGGGAGATCAAGCTCCGAGTCATTCGGCCTGGGGCTTGGTGATTGTCACAGCAGGCCATGAGGGTCATATCAGAACA
TTTCAGAACTTCGGCTTTCCCGTTAGAGTATAGCATATGGACCTGGATGCTGAGTCATCCTGCAGGAGTGTAGTTTTGTG
TATAGAATACACGGAAATATATATTCAATGAGATGCACAGCATTGGGTTGGGGGATTGGATTTGGTTGCTCCTTGGTGCG
CCTGCTTCAGAATTTGGAATCTTCGACTAACACATGGTCAGTACTCAGGTACTTGTGGTATGACATTCATTTTAGATATT
ACCTCAAATTGTACATGAAAGTGAATCCCTAGAAAGAGTAATGCTGTCCGCTGGTTGGAGTGACATCTTTCGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20037.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis