Browse Element(s) Details


Os.51093.1.S1_at

Description gb:AK060633.1
DB_XREF= gi:32970651
TID=Os.51093.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A12, full insert sequence.
FL= gb:AK060633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4258011/11BRO1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51093.1.S1_at--810--2371Chr02:25586433..25586457 (25 bp)
AAACCGGTAATCAATCATCGTAAGG
LOC_Os02g42580
Os.51093.1.S1_at--1143--5231Chr02:25586383..25586407 (25 bp)
GAATCACATGTGTCAGTGCCACTGC
LOC_Os02g42580
Os.51093.1.S1_at--916--3451Chr02:25586370..25586394 (25 bp)
CAGTGCCACTGCATTTGCATGTTAA
LOC_Os02g42580
Os.51093.1.S1_at--146--8791Chr02:25586351..25586375 (25 bp)
TGTTAAAGATCGTCTGCTGCAGTGA
LOC_Os02g42580
Os.51093.1.S1_at--1015--7331Chr02:25586330..25586354 (25 bp)
GTGAATTGCAGGGTCGATTACGATT
LOC_Os02g42580
Os.51093.1.S1_at--1027--1871Chr02:25586311..25586335 (25 bp)
ACGATTTGTTTGTTTACTTGCTGGG
LOC_Os02g42580
Os.51093.1.S1_at--279--951Chr02:25586271..25586295 (25 bp)
AGGAACCTGCACTGGCGATTACATG
LOC_Os02g42580
Os.51093.1.S1_at--1145--10451Chr02:25586231..25586255 (25 bp)
TTACCATACCATCTTTGTGGGCTCG
LOC_Os02g42580
Os.51093.1.S1_at--325--7491Chr02:25586215..25586239 (25 bp)
GTGGGCTCGTTATTGTAGACAACAT
LOC_Os02g42580
Os.51093.1.S1_at--12--8011Chr02:25586190..25586214 (25 bp)
GGATGGTTCATCTACATGCCACTTA
LOC_Os02g42580
Os.51093.1.S1_at--402--6931Chr02:25586142..25586166 (25 bp)
GTAGTGCCTTATTTTGTTAGCCATT
LOC_Os02g42580
Target Sequence 
AAACCGGTAATCAATCATCGTAAGGAAACCCTTCACGTTGCAAAAGGAAGGAATCACATGTGTCAGTGCCACTGCATTTG
CATGTTAAAGATCGTCTGCTGCAGTGAATTGCAGGGTCGATTACGATTTGTTTGTTTACTTGCTGGGGGTGTAAATAGCC
ACAGGAACCTGCACTGGCGATTACATGGGTTGTTACTATGATTTACCATACCATCTTTGTGGGCTCGTTATTGTAGACAA
CATGGATGGTTCATCTACATGCCACTTAACATTTTGCAAGAATATTATGAGGTAGTGCCTTATTTTGTTAGCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis