Browse Element(s) Details


OsAffx.9386.1.S1_x_at

Description gb:NM_191564.1
DB_XREF= gi:34910211
GEN=B1060H01.20
TID=OsAffx.9386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1060H01.20 (B1060H01.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g425301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9386.1.S1_x_at--539--7991Chr01:31010341..31010365 (25 bp)
GGATGAGCGATGTTGTTGCTCCCTC
NONE
OsAffx.9386.1.S1_x_at--349--10671Chr01:31010315..31010339 (25 bp)
TTCCTCATTGCTGTTGCGCCTGAGA
NONE
OsAffx.9386.1.S1_x_at--623--3751Chr01:31010312..31010336 (25 bp)
CTCATTGCTGTTGCGCCTGAGAGCA
NONE
OsAffx.9386.1.S1_x_at--268--8911Chr01:31010295..31010319 (25 bp)
TGAGAGCATGGAGCGGTGCCACCAC
NONE
OsAffx.9386.1.S1_x_at--681--4277Chr11:730083..730107 (25 bp)
CCTGTTTGGTTGGTGACCTGAGCAC
NONE
OsAffx.9386.1.S1_x_at--337--8933Chr11:730096..730120 (25 bp)
TGACCTGAGCACCACGCCTGAAGAA
NONE
OsAffx.9386.1.S1_x_at--1096--1813Chr11:730109..730188 (25 bp)
ACGCCTGAAGAATTTGCACGCCTGA
NONE
OsAffx.9386.1.S1_x_at--478--212Chr11:10748323..10748347 (25 bp)
ATTTGCACGCCTGAGAGGCATCCAA
NONE
OsAffx.9386.1.S1_x_at--139--6212Chr11:10748309..10748333 (25 bp)
GAGGCATCCAACAAACTCATGGGTT
NONE
OsAffx.9386.1.S1_x_at--763--2392Chr11:10748297..10748321 (25 bp)
AAACTCATGGGTTCTACCTGACCAG
NONE
OsAffx.9386.1.S1_x_at--655--7873Chr10:18712505..18712649 (24 bp)
GGTTCTACCTGACCAGGCAGCCTGA
NONE
Target Sequence 
GGATGAGCGATGTTGTTGCTCCCTCCTTCCTCATTGCTGTTGCGCCTGAGAGCATGGAGCGGTGCCACCACCGTCCCGCT
GAGGATGGGGGAGCGTGGCCGTGGTCGTGCCACGCGGGGGGGGGGGGGGATGGGGCCTGTTTGGTTGGTGACCTGAGCAC
CACGCCTGAAGAATTTGCACGCCTGAGAGGCATCCAACAAACTCATGGGTTCTACCTGACCAGGCAGCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9386.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis