Browse Element(s) Details


Os.26726.1.S1_a_at

Description gb:AK073849.1
DB_XREF= gi:32983872
TID=Os.26726.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.26726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069E14, full insert sequence.
FL= gb:AK073849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4252011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0045333biological_processcellular respiration
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004327molecular_functionformaldehyde dehydrogenase (glutathione) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26726.1.S1_a_at--892--8931Chr02:25560916..25560940 (25 bp)
TGACTGTAACTCTTGGTGTGCCAAA
LOC_Os02g42520
Os.26726.1.S1_a_at--519--3431Chr02:25560883..25560907 (25 bp)
CAGAGGTTTCTGCTCATTATGCACT
LOC_Os02g42520
Os.26726.1.S1_a_at--201--3591Chr02:25560869..25560893 (25 bp)
CATTATGCACTACTTCTGTCTGGAA
LOC_Os02g42520
Os.26726.1.S1_a_at--336--2851Chr02:25560413..25560437 (25 bp)
AAGTCGATGACCTTGTTACACATGA
LOC_Os02g42520
Os.26726.1.S1_a_at--726--7471Chr02:25560326..25560350 (25 bp)
GTGTGATTCACATGCCTCAGTGACA
LOC_Os02g42520
Os.26726.1.S1_a_at--95--6911Chr02:25560278..25560302 (25 bp)
GTATCTCTACAATTTTTTCGCTTTA
LOC_Os02g42520
Os.26726.1.S1_a_at--1136--10291Chr02:25560263..25560287 (25 bp)
TTTCGCTTTATCTCAGTCGTGAAGT
LOC_Os02g42520
Os.26726.1.S1_a_at--476--2091Chr02:25560215..25560239 (25 bp)
ACATCATTCTATGTTTCCACCTTGG
LOC_Os02g42520
Os.26726.1.S1_a_at--654--6331Chr02:25560183..25560207 (25 bp)
GATGCTGTCTAACTTTGTGTACCTA
LOC_Os02g42520
Os.26726.1.S1_a_at--460--8451Chr02:25560076..25560100 (25 bp)
GGCCAAGATCTATCTTCTTCCAGAG
LOC_Os02g42520
Os.26726.1.S1_a_at--1143--9211Chr02:25560058..25560082 (25 bp)
TCCAGAGCTTCCTGCTTCAAATGAA
LOC_Os02g42520
Target Sequence 
TGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTG
AAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGGAAATCCA
AGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCAACAAGGCACTTGAACTGATGCTAGAAAACAAGTGTT
TGCGATGTGTGATTCACATGCCTCAGTGACAGGGTTGGACAACTAAGTGTTATCGTATCTCTACAATTTTTTCGCTTTAT
CTCAGTCGTGAAGTTTTCATCAGCAAATCAGATTATCACATCATTCTATGTTTCCACCTTGGAAGTTTTGATGCTGTCTA
ACTTTGTGTACCTATCTCAAGAATTATTCATGCTATTTATCTTGCTGTAAAATTAGTTTGTAATGACTGCAATTTTGTAT
TGATGTTCCATGTATAGGCCAAGATCTATCTTCTTCCAGAGCTTCCTGCTTCAAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26726.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis