Browse Element(s) Details


Os.54384.1.S1_at

Description gb:AK106548.1
DB_XREF= gi:32991757
TID=Os.54384.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.54384 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F09, full insert sequence.
FL= gb:AK106548.1 gb:AK103830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54384.1.S1_at--1084--651Chr02:25574614..25574638 (25 bp)
ATGAAGATTCCATATCTCTGGGACT
LOC_Os02g42550
Os.54384.1.S1_at--1109--7351Chr02:25574497..25574521 (25 bp)
GTGAACCACCTGTATCAGATCCAAT
LOC_Os02g42550
Os.54384.1.S1_at--886--6151Chr02:25573884..25573908 (25 bp)
GAGGTTGAGCCGAAGACAGGTCTTT
LOC_Os02g42550
Os.54384.1.S1_at--652--991Chr02:25573867..25573891 (25 bp)
AGGTCTTTTTGGGAGCCTGAAATCT
LOC_Os02g42550
Os.54384.1.S1_at--107--1691Chr02:25573854..25573878 (25 bp)
AGCCTGAAATCTTTTGCTTCTGGGA
LOC_Os02g42550
Os.54384.1.S1_at--905--5351Chr02:25573786..25573810 (25 bp)
GAAGATGACACATTCCTCTTGCTGC
LOC_Os02g42550
Os.54384.1.S1_at--298--4771Chr02:25573766..25573790 (25 bp)
GCTGCTACGACTTTGCGAGGCTGGA
LOC_Os02g42550
Os.54384.1.S1_at--433--1691Chr02:25573700..25573724 (25 bp)
AGCCTTTGAAATTTGTGAGCCTGAA
LOC_Os02g42550
Os.54384.1.S1_at--787--9831Chr02:25573667..25573691 (25 bp)
TAAAGTCGCCTTTAAGCTACCGAAG
LOC_Os02g42550
Os.54384.1.S1_at--1107--3291Chr02:25573635..25573659 (25 bp)
CAAATTCATGCTGTCACGTTACTGA
LOC_Os02g42550
Os.54384.1.S1_at--222--5931Chr02:25573598..25573622 (25 bp)
GAGCATTGTGTATCCATTGGGCGAT
LOC_Os02g42550
Target Sequence 
ATGAAGATTCCATATCTCTGGGACTAGATACTAAATCAGATCCAACTGACCTAGAACTAGGGGAAAGCAAATCTGACAAG
ATAGAGCTGAATAGTACAGCAAGGTTTAAGAATGTCAGTGAACCACCTGTATCAGATCCAATTGAAGGTGATAAGACGGT
NAAGGCAAATGTACTGGACAGAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAATCTTTTG
CTTCTGGGATCAGAAATTTTTGGAGAAAACTGTGAATTTCTTGTTATGTCTGGAAGATGACACATTCCTCTTGCTGCTAC
GACTTTGCGAGGCTGGAGCAAATTATGACGTTTTCTGAAAGCTGTAGAATTGGTTATCAGCCTTTGAAATTTGTGAGCCT
GAAGCAAATTGTAAAGTCGCCTTTAAGCTACCGAAGTAATGGTCAAATTCATGCTGTCACGTTACTGACAAGCTAGGTAT
GAGCATTGTGTATCCATTGGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis