Browse Element(s) Details


OsAffx.2943.1.S1_x_at

Description tigr:9630.m04080
TID=OsAffx.2943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g425807/11BRO1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2943.1.S1_x_at--520--1531Chr02:25586859..25586883 (25 bp)
AGCAGGCTGCCTTGTATTATGAAGA
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--1128--1271Chr02:25586788..25586812 (25 bp)
AGATCTTGGGTAGCACACATCCTGT
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--31--3491Chr02:25586619..25586643 (25 bp)
CAGGATCCCTTTATGATGCTGCCTC
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--1078--3811Chr02:25586601..25586625 (25 bp)
CTGCCTCCAGACTCGAACAAGATAT
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--657--5971Chr02:25586548..25586572 (25 bp)
GAGAACAACCGCATCTATCTTCTGC
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--597--7171Chr02:25586471..25586495 (25 bp)
GTCTGCTTCCCTGAGTGAGATCTTA
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--1036--6031Chr02:25586134..25586479 (25 bp)
GAGATCTTAGATCCATTTTGGCAAC
LOC_Os02g42580
OsAffx.2943.1.S1_x_at--1107--3571Chr02:25586121..25586145 (25 bp)
CATTTTGGCAACTATGGGTCTCCCT
NONE
OsAffx.2943.1.S1_x_at--576--7171Chr02:25586104..25586128 (25 bp)
GTCTCCCTCTTCAAGTGTTTGTCTG
NONE
OsAffx.2943.1.S1_x_at--1084--3191Chr02:25586072..25586096 (25 bp)
CAATGTACTGAACGATCGTGCTGGT
NONE
OsAffx.2943.1.S1_x_at--177--7311Chr02:25586055..25586079 (25 bp)
GTGCTGGTGAATGCACCGACGCCAT
NONE
Target Sequence 
AGCAGGCTGCCTTGTATTATGAAGAAGCTTATGCTTCACTGGTTATCCCTCCACTACAAAACCACTTTGAGAGATCTTGG
GTAGCACACATCCTGTTAAAGGCTGCTCTATTCAATGCAGAAGCTAGCTATCACTATGCTATTGAACTGCATGAGAAAAC
AGAAATCGGTGAAGAGATAGCTCGATTACAGTTTGGAATTAATGCAATTGTCGATGCAAAGAAAGCTGTCCGTGGAGCCC
CAGGATCCCTTTATGATGCTGCCTCCAGACTCGAACAAGATATGAACCAGAACTTGGAGAGAGCACTGAATGAGAACAAC
CGCATCTATCTTCTGCGAGTCCCAGCAGCCAAACTACTAGCTCCTCTGCCAGCAGCTTCACTTGTCCGGTCTGCTTCCCT
GAGTGAGATCTTAGATCCATTTTGGCAACTATGGGTCTCCCTCTTCAAGTGTTTGTCTGAAGAAGGCAATGTACTGAACG
ATCGTGCTGGTGAATGCACCGACGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2943.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis