Browse Element(s) Details


Os.27686.1.S1_at

Description gb:AK107831.1
DB_XREF= gi:32993040
TID=Os.27686.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G12, full insert sequence.
FL= gb:AK107831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4257011/11Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019684biological_processphotosynthesis, light reaction
GO:0030385molecular_functionferredoxin:thioredoxin reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27686.1.S1_at--390--8751Chr02:25584508..25584532 (25 bp)
TGTACCACGTCATGAAGGCGCCCGA
LOC_Os02g42570
Os.27686.1.S1_at--869--7611Chr02:25584428..25584452 (25 bp)
GGGAAGCGCATCACGGCCAATTTCC
LOC_Os02g42570
Os.27686.1.S1_at--247--1051Chr02:25584397..25584421 (25 bp)
AGGTGGAGTTCCATCTCAGCGTGGA
LOC_Os02g42570
Os.27686.1.S1_at--843--1231Chr02:25584391..25584415 (25 bp)
AGTTCCATCTCAGCGTGGAGGGCCA
LOC_Os02g42570
Os.27686.1.S1_at--1039--6031Chr02:25584304..25584328 (25 bp)
GAGATCGATCAGTAACCGTGACCAA
LOC_Os02g42570
Os.27686.1.S1_at--160--7371Chr02:25584287..25584311 (25 bp)
GTGACCAAGTAAGCCTAGCGCCTTT
LOC_Os02g42570
Os.27686.1.S1_at--369--1691Chr02:25584276..25584300 (25 bp)
AGCCTAGCGCCTTTTGTTATACAAT
LOC_Os02g42570
Os.27686.1.S1_at--656--7531Chr02:25584238..25584262 (25 bp)
GTGGCATGTGTATATTGTTTCGGTT
LOC_Os02g42570
Os.27686.1.S1_at--821--211Chr02:25584227..25584251 (25 bp)
ATATTGTTTCGGTTGTGTGGTGAGA
LOC_Os02g42570
Os.27686.1.S1_at--277--1251Chr02:25584161..25584185 (25 bp)
AGTTGTTTGCTTACTGTCATGCTCT
LOC_Os02g42570
Os.27686.1.S1_at--1125--5651Chr02:25584130..25584154 (25 bp)
TCCAGTTCGACATCTAATTTTTCAG
LOC_Os02g42570
Target Sequence 
TGTACCACGTCATGAAGGCGCCCGACCTGGACATCAAGGGAATGGAGGGCGTCGTCAAGCAGTACGTGGCCGTCTGGAAG
GGGAAGCGCATCACGGCCAATTTCCCCTTCAAGGTGGAGTTCCATCTCAGCGTGGAGGGCCAGGACAAGCCGGTCAGGTT
CTTCGTCCACCTCCGCGAGGACGAGTTCGAGTTCATCGACGAATGAGATCGATCAGTAACCGTGACCAAGTAAGCCTAGC
GCCTTTTGTTATACAATAATGACCGCAGCNGTGGCATGTGTATATTGTTTCGGTTGTGTGGTGAGAGAGATGAGAGAGAC
TGAAGAGAGTAGGGAACATGGCAAGGAAGTTGTTTGCTTACTGTCATGCTCTTCCTCCTCCAGTTCGACATCTAATTTTT
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis