Browse Element(s) Details


OsAffx.24690.1.S1_at

Description tigr:9630.m04068
TID=OsAffx.24690.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4250611/11hypothetical protein
LOC_Os02g4248811/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42450OsAffx.26230.2.S1_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_x_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24690.1.S1_at--856--3632Chr02:25558437..25558496 (25 bp)
CTAATAACCGTGGTACGCGGCGGCG
LOC_Os02g42506
OsAffx.24690.1.S1_at--1071--2572Chr02:25558392..25558416 (25 bp)
AACGGGCCCATTGCAGGCAGCGAGC
LOC_Os02g42506
OsAffx.24690.1.S1_at--1117--4072Chr02:25558372..25558396 (25 bp)
CGAGCACGGAGGAGGCCTAGCACTC
LOC_Os02g42506
OsAffx.24690.1.S1_at--369--892Chr02:25558360..25558384 (25 bp)
AGGCCTAGCACTCGGTGCGATCAGA
LOC_Os02g42506
OsAffx.24690.1.S1_at--541--5112Chr02:25558353..25558377 (25 bp)
GCACTCGGTGCGATCAGAAGCACAA
LOC_Os02g42506
OsAffx.24690.1.S1_at--780--6752Chr02:25558318..25558342 (25 bp)
GTTCACCGTGGCAAGCGAGAGTACA
LOC_Os02g42506
OsAffx.24690.1.S1_at--223--3372Chr02:25558282..25558306 (25 bp)
CACCGGTGCTTGGTCCACAGTGGAG
LOC_Os02g42506
OsAffx.24690.1.S1_at--163--952Chr02:25558259..25558283 (25 bp)
AGGAAGGTGTTCACCTCATCCACGA
LOC_Os02g42506
OsAffx.24690.1.S1_at--858--512Chr02:25558206..25558230 (25 bp)
ATCGATCCCACGATGCGCAGATCCA
LOC_Os02g42506
OsAffx.24690.1.S1_at--402--6352Chr02:25558195..25558219 (25 bp)
GATGCGCAGATCCATCTCGCGCGCG
LOC_Os02g42506
OsAffx.24690.1.S1_at--54--4672Chr02:25558171..25558195 (25 bp)
GCGTGCTCATCCTGCGCGATCAAAC
LOC_Os02g42506
Target Sequence 
CTAATAACCGTGGTACGCGGCGGCGGTGGCATGACAGTGAGGAGGAACGGGCCCATTGCAGGCAGCGAGCACGGAGGAGG
CCTAGCACTCGGTGCGATCAGAAGCACAAGGAGAGAGGGGTTCACCGTGGCAAGCGAGAGTACAGCGAGGGAGACCACCG
GTGCTTGGTCCACAGTGGAGGAAGGTGTTCACCTCATCCACGAAGACCCTCACCCCCCAAAGCTCATCACCATCGATCCC
ACGATGCGCAGATCCATCTCGCGCGCGCGTGCTCATCCTGCGCGATCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis