Browse Element(s) Details


Os.17824.1.S1_x_at

Description gb:CB658940
DB_XREF= gi:29662665
DB_XREF=OSJNEc15G14.r
CLONE=OSJNEc15G14
TID=Os.17824.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17824 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566341.1 (A.thaliana) putative receptor ser thr protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4262011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17824.1.S1_x_at--1054--1671Chr02:25633657..25633681 (25 bp)
AGCCTGCTGGACATGGTGGATCCGA
LOC_Os02g42620
Os.17824.1.S1_x_at--462--531Chr02:25633638..25633662 (25 bp)
ATCCGAGCATGAAGGGAGGTTACCC
LOC_Os02g42620
Os.17824.1.S1_x_at--468--9731Chr02:25633599..25633623 (25 bp)
TCAAGTTCATCAAGGTGGCGCTGGC
LOC_Os02g42620
Os.17824.1.S1_x_at--337--3931Chr02:25633513..25633537 (25 bp)
CGGCCGGTGTGCTTGGAAGAGCTGG
LOC_Os02g42620
Os.17824.1.S1_x_at--393--1611Chr02:25633494..25633518 (25 bp)
AGCTGGAGATGCTCTGCCCGGGCTT
LOC_Os02g42620
Os.17824.1.S1_x_at--1016--8531Chr02:25633491..25633515 (25 bp)
TGGAGATGCTCTGCCCGGGCTTCGT
LOC_Os02g42620
Os.17824.1.S1_x_at--262--7591Chr02:25633475..25633499 (25 bp)
GGGCTTCGTCGGTGACGGCCACACC
LOC_Os02g42620
Os.17824.1.S1_x_at--687--5611Chr02:25633432..25633456 (25 bp)
GACACCGTCGGTAGCCCAGGCGTGA
LOC_Os02g42620
Os.17824.1.S1_x_at--980--9991Chr02:25633421..25633445 (25 bp)
TAGCCCAGGCGTGATGGTCGTCTCG
LOC_Os02g42620
Os.17824.1.S1_x_at--1143--2972Chr12:13542405..13542424 (20 bp)
AATCCAATGACAATGAATCACGACT
NONE
Os.17824.1.S1_x_at--803--671Chr02:25633248..25633272 (25 bp)
ATGACAATGAATCACGACTAATCTA
LOC_Os02g42620
Target Sequence 
AGCCTGCTGGACATGGTGGATCCGAGCATGAAGGGAGGTTACCCGGAGGAGGAGGCGCTCAAGTTCATCAAGGTGGCGCT
GGCCTGCACGCAGGNGAAGCCGTGCAGCCGNCCGACGATNCGGCAGGTGGTGAANNNNCTGTCGCGGCCGGTGTGCTTGG
AAGAGCTGGAGATGCTCTGCCCGGGCTTCGTCGGTGACGGCCACACCCACGANGCNGCGGCGGCGGACACCGTCGGTAGC
CCAGGCGTGATGGTCGTCTCGCCGGCTCTCTCNCCGAAGNTGAGGTGGCCGACGGGGACCGCAACGNCCANNANTACCGA
ACACTNGATGTGTGCTGGTTNNGNGAATNTNNCANAGGTTNNNNNNNCTNGATTTTCCAANTNTCATCATATTANCGNTA
TCACAAATCCAATGACAATGAATCACGACTAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17824.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis