Browse Element(s) Details


Os.10646.1.S1_at

Description gb:AK068974.1
DB_XREF= gi:32978998
TID=Os.10646.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002E14, full insert sequence.
FL= gb:AK068974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed
LOC_Os02g42710Os.23529.1.A1_at11/112+25678175..25681226Elicitor-responsive protein 3, putative, expressed
LOC_Os02g42720OsAffx.12460.1.S1_at9/112+25683447..25684411hypothetical protein
LOC_Os02g42730Os.12078.1.S1_at11/112+25688048..25690666expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10646.1.S1_at--93--6591Chr02:25664239..25664343 (25 bp)
GTTGTCTAATATCCCATCTTTTGAG
LOC_Os02g42670
Os.10646.1.S1_at--937--7991Chr02:25664370..25664394 (25 bp)
GGATGGCAGTTTCAAATCGGCACAA
LOC_Os02g42670
Os.10646.1.S1_at--1013--2771Chr02:25665295..25665319 (25 bp)
AAGAGGAATCCAACCCTGGGACCAT
LOC_Os02g42670
Os.10646.1.S1_at--861--10471Chr02:25665448..25665472 (25 bp)
TTACTACAGTAGTTCTTTCCCTTCT
LOC_Os02g42670
Os.10646.1.S1_at--881--9931Chr02:25665500..25665524 (25 bp)
TACGTGCACTGCATTCGTTTTGTCT
LOC_Os02g42670
Os.10646.1.S1_at--101--5471Chr02:25665584..25665608 (25 bp)
GAACTGAGGCCATGGTCCGACAGAA
LOC_Os02g42670
Os.10646.1.S1_at--796--2511Chr02:25665634..25665658 (25 bp)
AACATTCTTGTCATCTCTAGCATCG
LOC_Os02g42670
Os.10646.1.S1_at--1054--491Chr02:25665655..25665679 (25 bp)
ATCGTGTCACTACTTAACAGCGTCC
LOC_Os02g42670
Os.10646.1.S1_at--617--7251Chr02:25665676..25665700 (25 bp)
GTCCGCTCGGCAGATGAATGGTCTC
LOC_Os02g42670
Os.10646.1.S1_at--388--5291Chr02:25665691..25665715 (25 bp)
GAATGGTCTCACTTGTTTAACACTG
LOC_Os02g42670
Os.10646.1.S1_at--75--2971Chr02:25665726..25665750 (25 bp)
AATGGCATGCTGCATCTCTGCAAAA
LOC_Os02g42670
Target Sequence 
GTTGTCTAATATCCCATCTTTTGAGTACTTGAAAGTCATTACTGGTGCTGAGGATGGCAGTTTCAAATCGGCACAAAGAA
GAAGAAAGGTGATGAAGTATCTGGAGAAGAAATCGATTGTGTGGACTGAAGAGGAATCCAACCCTGGGACCATCCTCATC
CCAATTAATCAGAAGCAGGATCAGCAGGATTAGGTTCATGTACAAAGGTGGTGGCTCTCANTGACAAACTGACAGAAGTC
GATGTTCATAGCTGCNGCATCATTGATGTCCATTTTGAACCTTACTACAGTAGTTCTTTCCCTTCTCCTTTTGGGTATTT
GAACTGTGGAAGTTACGTGCACTGCATTCGTTTTGTCTGCACATTGCAGACATTTCGAACTCATTATTGCCNCCTCGCTA
GTGCCAGAAGGAAGAAAGAACTGAGGCCATGGTCCGACAGAAATGCAGCAGTACTAGTACTAGTAGTAACATTCTTGTCA
TCTCTAGCATCGTGTCACTACTTAACAGCGTCCGCTCGGCAGATGAATGGTCTCACTTGTTTAACACTGATGTGCGCAAA
ATGGCATGCTGCATCTCTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis