Browse Element(s) Details


OsAffx.12458.1.S1_at

Description tigr:9630.m04083
TID=OsAffx.12458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4261011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42590Os.20037.2.A1_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42590Os.20037.1.S1_x_at11/112+25613880..25619005WD-40 repeat family protein, putative, expressed
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12458.1.S1_at--56--6651Chr02:25632704..25632728 (25 bp)
GTTGTTGCCGTTACTTGTGGCGGCT
LOC_Os02g42610
OsAffx.12458.1.S1_at--102--7551Chr02:25632654..25632678 (25 bp)
GTGGCGGGATCTGGCCGTTCCACAC
LOC_Os02g42610
OsAffx.12458.1.S1_at--730--3211Chr02:25632606..25632630 (25 bp)
CAAGGGAAGGGCGACGTAATCTCAA
LOC_Os02g42610
OsAffx.12458.1.S1_at--1137--5311Chr02:25632601..25632625 (25 bp)
GAAGGGCGACGTAATCTCAATTTTT
LOC_Os02g42610
OsAffx.12458.1.S1_at--750--8171Chr02:25632509..25632585 (25 bp)
GGAAGAGCCGGATTTGGCTACCCTC
LOC_Os02g42610
OsAffx.12458.1.S1_at--100--6531Chr02:25632499..25632523 (25 bp)
GATTTGGCTACCCTCAAGCTCGTGG
LOC_Os02g42610
OsAffx.12458.1.S1_at--932--1071Chr02:25632441..25632465 (25 bp)
AGGGCGCCGCCGTGAGACAACGCTA
LOC_Os02g42610
OsAffx.12458.1.S1_at--1033--9931Chr02:25632418..25632442 (25 bp)
TACCCGCCAAGGGAAGGGCGTGCCG
LOC_Os02g42610
OsAffx.12458.1.S1_at--338--4431Chr02:25632394..25632418 (25 bp)
GCCATGCCGGCGAGCGTTTCTTGAG
LOC_Os02g42610
OsAffx.12458.1.S1_at--357--4271Chr02:25632388..25632412 (25 bp)
CCGGCGAGCGTTTCTTGAGTTCGAA
LOC_Os02g42610
OsAffx.12458.1.S1_at--1007--4051Chr02:25632384..25632408 (25 bp)
CGAGCGTTTCTTGAGTTCGAAGGAG
LOC_Os02g42610
Target Sequence 
GTTGTTGCCGTTACTTGTGGCGGCTGGATCTGGCGGCCCCCAAGCTCGCGGTGGCGGGATCTGGCCGTTCCACACCCGAG
CACATGGGGAGGCAGGGCCAAGGGAAGGGCGACGTAATCTCAATTTTTTTTAGGTGGGAATGGGGAAGAGCCGGATTTGG
CTACCCTCAAGCTCGTGGCACCCGAGCTCGTGGGGAGGCAGGACCGAGGGAAGGGCGCCGCCGTGAGACAACGCTACCCG
CCAAGGGAAGGGCGTGCCGCCATGCCGGCGAGCGTTTCTTGAGTTCGAAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis