Browse Element(s) Details


Os.23548.1.S1_at

Description gb:AK102630.1
DB_XREF= gi:32987839
TID=Os.23548.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033099L09, full insert sequence.
FL= gb:AK073049.1 gb:AK102630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1895011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18910Os.46995.1.S1_x_at1/115+10957906..10960833retrotransposon protein, putative, unclassified
LOC_Os05g18920NANA5+10961163..10965386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18930NANA5+10965946..10968207retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18940OsAffx.26949.1.S1_at11/115+10970220..10970627Stigma-specific protein, Stig1 containing protein
LOC_Os05g18950Os.23548.1.S1_at11/115+10979730..10981461pentatricopeptide, putative, expressed
LOC_Os05g18960OsAffx.27108.2.S1_s_at11/115+10982042..10982641GRF zinc finger family protein
LOC_Os05g18970OsAffx.26950.1.S1_at11/115+10982991..10985566hypothetical protein
LOC_Os05g18980OsAffx.8589.1.S1_at1/115+10993853..10997167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990Os.39476.1.S1_at4/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990OsAffx.8455.1.S1_at1/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19000Os.5881.1.S1_at2/115+11004994..11007169expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23548.1.S1_at--817--8051Chr05:10980869..10980893 (25 bp)
GGAGACTGGCTTAGACTTCTTCGAA
LOC_Os05g18950
Os.23548.1.S1_at--755--9191Chr05:10981006..10981030 (25 bp)
TGCCATTTATGGCTGATGATTCTGT
LOC_Os05g18950
Os.23548.1.S1_at--309--7591Chr05:10981048..10981072 (25 bp)
GGGCTTGCAAGATCCATGGCAATAT
LOC_Os05g18950
Os.23548.1.S1_at--670--3111Chr05:10981068..10981092 (25 bp)
AATATAGAGCTTTCTGCCCAGATCA
LOC_Os05g18950
Os.23548.1.S1_at--1147--5911Chr05:10981074..10981098 (25 bp)
GAGCTTTCTGCCCAGATCAGGGAGA
LOC_Os05g18950
Os.23548.1.S1_at--1051--2531Chr05:10981099..10981123 (25 bp)
AACTAATAGTTCTTGGTGGTCAGCA
LOC_Os05g18950
Os.23548.1.S1_at--968--8611Chr05:10981112..10981136 (25 bp)
TGGTGGTCAGCAACCTGGACGGTAT
LOC_Os05g18950
Os.23548.1.S1_at--294--6071Chr05:10981258..10981282 (25 bp)
GAGTTAATTCTATCACATGAAGTAG
LOC_Os05g18950
Os.23548.1.S1_at--555--6911Chr05:10981328..10981352 (25 bp)
GTATGATGTTACTTCTAGATGTTGG
LOC_Os05g18950
Os.23548.1.S1_at--757--10791Chr05:10981367..10981391 (25 bp)
TTGGGACAAAACCTGTAACGCTCTG
LOC_Os05g18950
Os.23548.1.S1_at--893--7051Chr05:10981381..10981405 (25 bp)
GTAACGCTCTGATTTTCATTTGGGA
LOC_Os05g18950
Target Sequence 
GGAGACTGGCTTAGACTTCTTCGAAGAGTTNGNNTACNGAATATANGGTCNNTCCAANTNATGGTNCATTATNGGGTGTG
TGGTAGATCNTTTAGNCCGTGCTGGTCGTTTTCNGGAGGCAATTCAGATNATAGAGAGGATGCCATTTATGGCTGATGAT
TCTGTGTGGGNTGCACTTCTTGGGGCTTGCAAGATCCATGGCAATATAGAGCTTTCTGCCCAGATCAGGGAGAAACTAAT
AGTTCTTGGTGGTCAGCAACCTGGACGGTATGTGNCTGTTAGGAACATGTATTTAGAAGAAGGGAACTGGTATGCTGCCN
CTAGAATGGGAGAGGTGATGCAGGAGGCTGGTATTAAGAAGATAGTGGGTATGAGCAGTGTTGTGCTTNATTGAGTTAAT
TCTATCACATGAAGTAGTAGTTATATTATTCATCGGATTAGATGTTTGNAAGAACAGAATAGGTATGATGTTACTTCTAG
ATGTTGGAATTAATTTGTCATTTGGGACAAAACCTGTAACGCTCTGATTTTCATTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis