Browse Element(s) Details


Os.23556.1.S1_at

Description gb:AK066007.1
DB_XREF= gi:32976025
TID=Os.23556.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044K14, full insert sequence.
FL= gb:AK066007.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3639011/11nucleotide-sugar transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36360Os.5755.1.S1_at9/112+21950720..21954252Zinc finger, C2H2 type family protein, expressed
LOC_Os02g36370OsAffx.2879.1.S1_at11/112+21961946..21964357hypothetical protein
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015780biological_processnucleotide-sugar transport
GO:0005338molecular_functionnucleotide-sugar transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23556.1.S1_at--1123--8211Chr02:21975828..21975852 (25 bp)
GGAATTCTTGTTGGTCTGGTCACAA
LOC_Os02g36390
Os.23556.1.S1_at--1090--6791Chr02:21975702..21975726 (25 bp)
GTTTTGTGATAGTGTCAGCTCTCCT
LOC_Os02g36390
Os.23556.1.S1_at--167--1591Chr02:21975686..21975710 (25 bp)
AGCTCTCCTTGTAACTGCACTACTA
LOC_Os02g36390
Os.23556.1.S1_at--329--211Chr02:21975653..21975677 (25 bp)
ATTTGACGGAAAGCCTCCATCACTC
LOC_Os02g36390
Os.23556.1.S1_at--1139--9231Chr02:21975638..21975662 (25 bp)
TCCATCACTCTATTGCCTGATAGCA
LOC_Os02g36390
Os.23556.1.S1_at--62--4471Chr02:21975624..21975648 (25 bp)
GCCTGATAGCATTACCACTTGTCAT
LOC_Os02g36390
Os.23556.1.S1_at--467--10131Chr02:21975486..21975510 (25 bp)
TATGCTAACCTCATTTTGATCCCAC
LOC_Os02g36390
Os.23556.1.S1_at--693--6371Chr02:21975469..21975493 (25 bp)
GATCCCACGAAAGTTGGATGCGCCT
LOC_Os02g36390
Os.23556.1.S1_at--70--7991Chr02:21975454..21975478 (25 bp)
GGATGCGCCTTGAATGGGCCATATA
LOC_Os02g36390
Os.23556.1.S1_at--168--1171Chr02:21975335..21975359 (25 bp)
AGTTTATTCCGGCAGTCAGTTTGAT
LOC_Os02g36390
Os.23556.1.S1_at--1123--5671Chr02:21975291..21975315 (25 bp)
GACTTGATTTTCTTCTTTTACATTA
LOC_Os02g36390
Target Sequence 
GGAATTCTTGTTGGTCTGGTCACAACATATGCAGGAGGTGTTAGAAAGGGTTTTGTGATAGTGTCAGCTCTCCTTGTAAC
TGCACTACTACAATTTATATTTGACGGAAAGCCTCCATCACTCTATTGCCTGATAGCATTACCACTTGTCATGACAAGCA
TATTTATTTACCAGAAGTATCCATATGTTGATAGAAAGAAGAAAGACTGATAAGCTTGCTCAGAAGAGAAGGGAATTATT
TAGCATCAGCACAACATAAATACATTATGCTAACCTCATTTTGATCCCACGAAAGTTGGATGCGCCTTGAATGGGCCATA
TATGACCTTGAAGAGTGTCTCTTCATGAAGCTATGTATCATTCATCTAATGATCTCTATATTAAATGGATCACATGTTCA
CAAAACATATGGCTGGAGTTTATTCCGGCAGTCAGTTTGATATTAGTTGTATTTTCCATTGACTTGATTTTCTTCTTTTA
CATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis