Browse Element(s) Details


Os.23590.1.A1_at

Description gb:CA760082
DB_XREF= gi:25804121
DB_XREF=BR060012A10H09.ab1
CLONE=BR060012A10H09.ab1
TID=Os.23590.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0468B07.31 (P0468B07.31), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5963010/11Exostosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23590.1.A1_at--939--6311Chr01:34814000..34814024 (25 bp)
GATGAACTAGAGCTTCCTTTTGAAG
LOC_Os01g59630
Os.23590.1.A1_at--524--2811Chr01:34812991..34813014 (24 bp)
AAGATAGCTTTGTTCGTTTCGTCAA
LOC_Os01g59630
Os.23590.1.A1_at--20--2631Chr01:34812954..34812978 (25 bp)
AACCTGGTTGGCTGGTGAAGTACCT
LOC_Os01g59630
Os.23590.1.A1_at--718--10311Chr01:34812776..34812800 (25 bp)
TTTCTATATTCAAGTCCTGCTCGAC
LOC_Os01g59630
Os.23590.1.A1_at--107--4651NONE
GCGTATGTACATGCGACTGCGGAGT
NONE
Os.23590.1.A1_at--894--8771Chr01:34812385..34812409 (25 bp)
TGTTTTGAATCTACCTTCTGTTTTG
LOC_Os01g59630
Os.23590.1.A1_at--48--10612Chr09:4331640..4331943 (25 bp)
TTCTGTTTTGTCTTTCCTACTTCCA
NONE
Os.23590.1.A1_at--68--9251Chr01:34812356..34812380 (25 bp)
TCCTACTTCCATAGCTTAGCGATTC
LOC_Os01g59630
Os.23590.1.A1_at--701--9531Chr01:34812333..34812357 (25 bp)
TCTTTAGTTATTACTTGCCCGGGCT
LOC_Os01g59630
Os.23590.1.A1_at--521--7591Chr01:34812313..34812337 (25 bp)
GGGCTTCTGATCACTAAGGCGCTTG
LOC_Os01g59630
Os.23590.1.A1_at--1094--4311Chr01:34812250..34812274 (25 bp)
CCATTTTGCCCGTAACATGTGTAAT
LOC_Os01g59630
Target Sequence 
GATGAACTAGAGCTTCCTTTTGAAGGAATACTTGACTACAGGAAGATAGCTTTGTTCGTTTCGTCAAATGACGCTGTTNA
ACCTGGTTGGCTGGTGAAGTACCTGAGAAGCATTGATGCCAAAAGGATCAGACAAATGCAATCAAATCTTCTGAAGTACT
CTAGACATTTTCTATATTCAAGTCCTGCTCGACCTCTTGGACCTGANGATCTTACATGGAGAATGANNNCNGNTANGNNG
NNNNACNNNNNNTTNNANNNNNNACNNNCTNNNNNNGNNGNCNNANAGTCAAGGAGCGTATGTACATGCGACTGCGGAGT
GGGGAACAGCACGAAGATGTTTTGAATCTACCTTCTGTTTTGTCTTTCCTACTTCCATAGCTTAGCGATTCTTTAGTTAT
TACTTGCCCGGGCTTCTGATCACTAAGGCGCTTGTGTAAATTGTTCTTGAAAAAACACATCATAGTTTTGATCCATTTTG
CCCGTAACATGTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23590.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis