Browse Element(s) Details


Os.23650.1.A1_at

Description gb:CA760193
DB_XREF= gi:25804232
DB_XREF=BR060004A10F07.ab1
CLONE=BR060004A10F07.ab1
TID=Os.23650.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23650 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g188209/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18790OsAffx.2674.1.S1_at11/112+10955205..10955979hypothetical protein
LOC_Os02g18800OsAffx.29369.1.S1_at11/112+10959461..10960432hypothetical protein
LOC_Os02g18810Os.54169.1.S1_at11/112+10960659..10968044pentatricopeptide, putative, expressed
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23650.1.A1_at--339--851Chr02:10982854..10982878 (25 bp)
ATGGCAAATGCAACTCCCTGATAGA
LOC_Os02g18820
Os.23650.1.A1_at--1158--2511Chr02:10982843..10982867 (25 bp)
AACTCCCTGATAGAGTAGCACCATC
LOC_Os02g18820
Os.23650.1.A1_at--207--5091Chr02:10982826..10982850 (25 bp)
GCACCATCAGTGTTAATGCCACCAT
LOC_Os02g18820
Os.23650.1.A1_at--315--591Chr02:10982811..10982835 (25 bp)
ATGCCACCATTGAGCCATTGTGGTA
LOC_Os02g18820
Os.23650.1.A1_at--735--51NONE
ATTGAGCCATTGTGGTATTCCCATG
NONE
Os.23650.1.A1_at--434--1171Chr02:10982718..10982742 (25 bp)
AGTAACCTGTTTTCTAATGGCATTA
LOC_Os02g18820
Os.23650.1.A1_at--211--331Chr02:10982668..10982692 (25 bp)
ATAACCTTTGGTTTGCCCATTATTG
LOC_Os02g18820
Os.23650.1.A1_at--1159--10851Chr02:10982661..10982685 (25 bp)
TTGGTTTGCCCATTATTGTCAGGAA
LOC_Os02g18820
Os.23650.1.A1_at--332--2731Chr02:10982459..10982483 (25 bp)
AAGCACAATTTGTCATGTCTGTAGT
LOC_Os02g18820
Os.23650.1.A1_at--57--7011Chr02:10982413..10982437 (25 bp)
GTACTTTCGATTTTACACCTAATAT
LOC_Os02g18820
Os.23650.1.A1_at--337--3611NONE
CATTGTCTATCTTAACTGTTGAGTT
NONE
Target Sequence 
ATGGCAAATGCAACTCCCTGATAGAGTAGCACCATCAGTGTTAATGCCACCATTGAGCCATTGTGGTATTCCCATGGCCC
CCTCCAAAAATAAACTGCATGAGGGGTCATCTTCTGGATAATATAAAAACATTTTCAGTAACCTGTTTTCTAATGGCATT
ATAATATGAGATCACTTGTTAAATATATAACCTTTGGTTTGCCCATTATTGTCAGGAACATCTTCGATCTATTAGCTCAG
CGAGAGATTTCCCCTCGAACAAAACACCAAGCTAAAAAACTTTGGAGCAAATCTCCAGGAAATGATGCTGATTCCAATGA
ACTAAGATATGCAGCTACAGATGCTAAACATGATATATATTCATGGTACGGGGTCTTACTTTACCAGGATGGTTTAAGCA
CAATTTGTCATGTCTGTAGTAATGATTGAGTTACATATATTGTACTTTCGATTTTACACCTAATATTTCTTTGGTAAATA
TTTATAAACCCTATGAACTATTCTTCATTGTCTATCTTAACTGTTGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23650.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis