Browse Element(s) Details


Os.23651.1.A1_at

Description gb:CA760194
DB_XREF= gi:25804233
DB_XREF=BR060007A20D04.ab1
CLONE=BR060007A20D04.ab1
TID=Os.23651.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23651 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49002 (A.thaliana) T49002 hypothetical protein F25L23.200 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g372201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37190Os.54232.1.S1_at11/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.29835.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.2.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37200Os.47421.1.S1_at11/115+21667636..21670977Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g37210OsAffx.14991.1.S1_at11/115+21675159..21676472anthocyanin-related membrane protein 1, putative
LOC_Os05g37220OsAffx.27206.1.S1_x_at11/115+21676659..21677393hypothetical protein
LOC_Os05g37220OsAffx.27206.1.S1_s_at10/115+21676659..21677393hypothetical protein
LOC_Os05g37220Os.23651.1.A1_at1/115+21676659..21677393hypothetical protein
LOC_Os05g37230OsAffx.447.1.S1_at4/115+21689891..21694442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g37230Os.52609.1.S1_at1/115+21689891..21694442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g37239NANA5+21696613..21697134NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23651.1.A1_at--201--111NONE
ATTCGAGTTTTCCTCTATCATCAGC
NONE
Os.23651.1.A1_at--529--10171Chr05:21677064..21677166 (25 bp)
TATCATCAGCAGGTTAATTGGCTCT
LOC_Os05g37220
Os.23651.1.A1_at--1050--7491Chr05:21677398..21677422 (25 bp)
GTGGTGCTGTTTAGGACTGGCAAAC
NONE
Os.23651.1.A1_at--523--3091Chr05:21677531..21677555 (25 bp)
AATACTGTAACCATGGATCGGTGAA
NONE
Os.23651.1.A1_at--849--6371Chr05:21677546..21677570 (25 bp)
GATCGGTGAAATAGGGCCTACCCCT
NONE
Os.23651.1.A1_at--279--1251Chr05:21677602..21677626 (25 bp)
AGTTGTTTTCTAGCCATTGCTGCTT
NONE
Os.23651.1.A1_at--514--4431NONE
GCCATTGCTGCTTTTTAAATTTTGC
NONE
Os.23651.1.A1_at--638--5651NONE
GACAGTAGCATATGCCTTATATTGA
NONE
Os.23651.1.A1_at--4--271NONE
ATAGGATTGGAGGTGCCCCAGGCCA
NONE
Os.23651.1.A1_at--33--7931NONE
GGAGGTGCCCCAGGCCAAAGTTTAG
NONE
Os.23651.1.A1_at--1154--10431Chr05:21677725..21677749 (25 bp)
TTAGGCCAACTCCAATTTCCCAAAT
NONE
Target Sequence 
ATTCGAGTTTTCCTCTATCATCAGCAGGTTAATTGGCTCTACNATCTAGCTTTTGCAGTGGTAGCCATTGGATTGATCAT
CTACTCCATAAACGAGAGTTCAGATGATGAGACAGCTGCAAGTACAATGGAAACTGAAACTCAGTATGACTATGAACAAC
TTTTATGTGAATAAACTGGTGGTGCTGTTTAGGACTGGCAAACAATCAGGAAGATCACAACTGTTAATGGGTTAATAAAG
AAAAGTAAGCTCCAGGCAATGGAAAATGTTATTTTGGAAAATTNAGATGTGATGNCAGAGCATATATATTAAATACTGTA
ACCATGGATCGGTGAAATAGGGCCTACCCCTGGAACCAGACAAGTTCATGTGAGAAATTTNCAGTTGTTTTCTAGCCATT
GCTGCTTTTTAAATTTTGCAAATTTTTATTTTTAAAATTGGACAGTAGCATATGCCTTATATTGAAGTGTGAGGAAATAG
GATTGGAGGTGCCCCAGGCCAAAGTTTAGGCCAACTCCAATTTCCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23651.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis