Browse Element(s) Details


Os.23656.1.A1_at

Description gb:AK101246.1
DB_XREF= gi:32986455
TID=Os.23656.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23656 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032C09, full insert sequence.
FL= gb:AK101246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g576509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57630Os.49680.1.S1_at11/114+34079714..34083512Leucine Rich Repeat family protein, expressed
LOC_Os04g57640Os.53757.1.S1_at11/114+34095289..34101017Poly polymerase catalytic domain containing protein, expressed
LOC_Os04g57650Os.23656.1.A1_at9/114+34102288..34105685expressed protein
LOC_Os04g57660Os.52985.1.S1_at11/114+34110677..34113143Leucine Rich Repeat family protein, expressed
LOC_Os04g57670Os.53857.1.S1_at11/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57670Os.53857.1.S2_at10/114+34114436..34117606pentatricopeptide, putative, expressed
LOC_Os04g57680Os.46068.1.S1_at11/114+34119412..34122849expressed protein
LOC_Os04g57690Os.51223.1.S1_at11/114+34123545..34126566expressed protein
LOC_Os04g57700Os.8444.1.S1_a_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.8444.1.S1_s_at11/114+34127493..34133264expressed protein
LOC_Os04g57700Os.36208.1.S1_at8/114+34127493..34133264expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23656.1.A1_at--1048--771Chr04:34103317..34103341 (25 bp)
ATGTGCTGCCTGTGCACCTATTCTA
LOC_Os04g57650
Os.23656.1.A1_at--933--4471Chr04:34103310..34103334 (25 bp)
GCCTGTGCACCTATTCTAACTGACT
LOC_Os04g57650
Os.23656.1.A1_at--299--10751Chr04:34102731..34103240 (25 bp)
TTGCAACTCTGTCGAGCGTGGGCAC
LOC_Os04g57650
Os.23656.1.A1_at--1144--1971Chr04:34102726..34103008 (25 bp)
ACTCTGTCGAGCGTGGGCACAATGA
LOC_Os04g57650
Os.23656.1.A1_at--243--5891Chr04:34102718..34102742 (25 bp)
GAGCGTGGGCACAATGATACTGATA
LOC_Os04g57650
Os.23656.1.A1_at--224--7491Chr04:34102714..34102738 (25 bp)
GTGGGCACAATGATACTGATATACT
LOC_Os04g57650
Os.23656.1.A1_at--1102--1831Chr04:34102687..34102711 (25 bp)
ACGCTCGCAATCAACGGTGGCAAAG
LOC_Os04g57650
Os.23656.1.A1_at--422--10691Chr04:34102447..34102471 (25 bp)
TTGCCTGACCTGATCTCCCTGAATT
LOC_Os04g57650
Os.23656.1.A1_at--928--9111Chr04:34102400..34102424 (25 bp)
TGCTGTGAGGCCTTTGTTGAGAGGT
LOC_Os04g57650
Os.23656.1.A1_at--889--3071Chr04:34102263..34102287 (25 bp)
AATAATTATGCCTTTGTGGAGTTGC
NONE
Os.23656.1.A1_at--446--151Chr04:34102259..34102283 (25 bp)
ATTATGCCTTTGTGGAGTTGCAGTG
NONE
Target Sequence 
ATGTGCTGCCTGTGCACCTATTCTAACTGACTNTGGGGAAGGAAGGAACAAGAAGTTNNATCGNCTTANNTCGGTTCACC
CCCGGAAAATCCTACTNTTCTTTGCAACTCTGTCGAGCGTGGGCACAATGATACTGATATACTNCACGCTCGCAATCAAC
GGTGGCAAAGNGGAGGCGTNGTNGTNNCCGGAGCGAAACACGACAACGGTTTNAGAAGTGCATTTNATAGCTGGAATTTT
CGCTTCTCGNTATCAGATTTTGGTTTGTTTGGGAGGAGAGAACTGGAGGAGGAAGCAACAGTAGCAGCAGCAATGATGCA
GCCNGGCNTNTCATGCCTGACNNACNCAATGCTGGGAGNGTTGCTCGATCANTGCTCCATTGTCACCTTTGCCTGACCTG
ATCTCCCTGAATTNTTTTGATCTGTACATGTAAANTGCTGTGAGGCCTTTGTTGAGAGGTAGAGAGAGAGAGAAAGAGAG
ATCCNTGGNTTGTTGNTGGNGTAAATGAGCTGGGGCGAAGCTATCCNTTTNTGCCATGCGAGTCCCAGNTTAGCTGTAAA
AGATNTGAAGNGAATAATTATGCCTTTGTGGAGTTGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23656.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis