Browse Element(s) Details


Os.23742.1.S1_at

Description gb:AK060588.1
DB_XREF= gi:32970606
TID=Os.23742.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B11, full insert sequence.
FL= gb:AK100918.1 gb:AK060588.1 gb:AK072633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3589011/11kinesin motor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35850Os.56892.1.S1_at11/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35850Os.56892.1.S1_x_at10/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35860Os.49782.1.S1_at11/119+20637344..20639287Ras-related protein Rab11B, putative, expressed
LOC_Os09g35870Os.57199.1.S1_at11/119+20640984..20642658Auxin-induced protein 22B, putative, expressed
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed
LOC_Os09g35900Os.5394.1.S1_at1/119+20659309..20659557expressed protein
LOC_Os09g35910Os.2363.1.S1_a_at11/119+20671508..20672799Homeobox domain containing protein, expressed
LOC_Os09g35920Os.49331.1.S1_at11/119+20673353..20678159expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23742.1.S1_at--920--891Chr09:20658039..20658063 (25 bp)
AGGCGACTCTCCTTCATCAAGAACT
LOC_Os09g35890
Os.23742.1.S1_at--672--371Chr09:20658188..20658208 (21 bp)
ATCAAGCTTGAGGAATCTTCGGCAT
LOC_Os09g35890
Os.23742.1.S1_at--353--491Chr09:20658332..20658356 (25 bp)
ATCTGGACGCAGACCGGGATGGATC
LOC_Os09g35890
Os.23742.1.S1_at--656--731Chr09:20658428..20658452 (25 bp)
ATGTTCGGGCTGAGCTTCAGTTTCA
LOC_Os09g35890
Os.23742.1.S1_at--334--9651Chr09:20658444..20658468 (25 bp)
TCAGTTTCAAGCCACGCAGATCTTT
LOC_Os09g35890
Os.23742.1.S1_at--861--1271Chr09:20658461..20658485 (25 bp)
AGATCTTTCAGCTGGGTCGGCGTCT
LOC_Os09g35890
Os.23742.1.S1_at--658--9451Chr09:20658477..20658501 (25 bp)
TCGGCGTCTACTCCCGAGACTGAAT
LOC_Os09g35890
Os.23742.1.S1_at--515--5991Chr09:20658492..20658516 (25 bp)
GAGACTGAATTCTTGCCCGGCCATG
LOC_Os09g35890
Os.23742.1.S1_at--385--8051Chr09:20658594..20658618 (25 bp)
GGAGAGAGATTTTGCCGCCGGAATT
LOC_Os09g35890
Os.23742.1.S1_at--37--8991Chr09:20658618..20658642 (25 bp)
TGAACTGATGGATTGCCCCGTTCTA
LOC_Os09g35890
Os.23742.1.S1_at--710--4531Chr09:20658632..20658656 (25 bp)
GCCCCGTTCTATCTATGCATGTGAA
LOC_Os09g35890
Target Sequence 
AGGCGACTCTCCTTCATCAAGAACTCCCTCATCGCAGACGGCGAGCTCCACGCTACCACCGCATCAAGCTTGAGGAATCT
TCGGCATGAGAGGGACATGCTGTACAGGCAGATGGTGAGGAAGCTGCACCTGGCCGAGAAGGAGAGGCTGTACGGCAAGT
GGGGGATCGACATGAGCACCAAGCAGAGGAGGCTGCAGCTGTCGCGGCGGATCTGGACGCAGACCGGGATGGATCACGTC
AGGGAGAGCGCCGCCCTCGTCGCGAAGCTGGTCGAGCACCTGGAGAAGGGGCAGGCCATCAGGGAGATGTTCGGGCTGAG
CTTCAGTTTCAAGCCACGCAGATCTTTCAGCTGGGTCGGCGTCTACTCCCGAGACTGAATTCTTGCCCGGCCATGGCGAT
GAACTGATGATGATGTCTCAGTGGTAGATGGATGCGTAGTGGAGGAGACGATGCTGCATGTCAGGAAGGAGAGGAGAGAG
ATTTTGCCGCCGGAATTGAACTGATGGATTGCCCCGTTCTATCTATGCATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis