Browse Element(s) Details


Os.23911.1.S1_at

Description gb:AK063439.1
DB_XREF= gi:32973457
TID=Os.23911.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E10, full insert sequence.
FL= gb:AK063439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3018010/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30150Os.9184.1.S1_at11/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30150Os.16381.1.S1_a_at1/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23911.1.S1_at--308--3431Chr09:18365752..18365898 (25 bp)
CAGATTTGGATAGTTCCCTGCGGCT
LOC_Os09g30180
Os.23911.1.S1_at--601--4191Chr09:18365889..18365913 (25 bp)
CCCTGCGGCTGATCAACTGGTTGGA
LOC_Os09g30180
Os.23911.1.S1_at--1060--2451Chr09:18366334..18366358 (25 bp)
AACACAACTGGTGCTGCCCATAATA
LOC_Os09g30180
Os.23911.1.S1_at--361--4431NONE
GCCATGTGGCAGATCAGGGTACTTC
NONE
Os.23911.1.S1_at--937--7831Chr09:18366971..18366995 (25 bp)
GGTACTTCGAGTTCAGCTGTTGGCA
LOC_Os09g30180
Os.23911.1.S1_at--103--4751Chr09:18366986..18367010 (25 bp)
GCTGTTGGCATATCTGGCTCATGAC
LOC_Os09g30180
Os.23911.1.S1_at--713--7751Chr09:18367042..18367066 (25 bp)
GGTGATCCTTAAGTTTGTAGCAGCA
LOC_Os09g30180
Os.23911.1.S1_at--606--1492Chr09:18367063..18367087 (25 bp)
AGCACAAAACTGAGCTGACACTTTT
LOC_Os09g30180
Os.23911.1.S1_at--1046--2171Chr09:18367080..18367104 (25 bp)
ACACTTTTAGCTTTTGTCTGTTCAA
LOC_Os09g30180
Os.23911.1.S1_at--365--9471Chr09:18367096..18367120 (25 bp)
TCTGTTCAACCATGGCATCTGCCTA
LOC_Os09g30180
Os.23911.1.S1_at--425--9191Chr09:18367115..18367139 (25 bp)
TGCCTATCATCTTTGACGCCATTAT
LOC_Os09g30180
Target Sequence 
CAGATTTGGATAGTTCCCTGCGGCTGATCAACTGGTTGGAGTATAGGCGGGTACTAGAGATATTGTGTGTTAATCTCGAC
AACATGCATGAAGTATTAACGGTCATGAACAACACAACTGGTGCTGCCCATAATAAGGAAAGCCATGTGGCAGATCAGGG
TACTTCGAGTTCAGCTGTTGGCATATCTGGCTCATGACAACGACGNCAATGTTAACCTCATGATATTTTGGTGATCCTTA
AGTTTGTAGCAGCACAAAACTGAGCTGACACTTTTAGCTTTTGTCTGTTCAACCATGGCATCTGCCTATCATCTTTGACG
CCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis