Browse Element(s) Details


Os.24025.1.S1_at

Description gb:AK105411.1
DB_XREF= gi:32990620
TID=Os.24025.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G06, full insert sequence.
FL= gb:AK105411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0316011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03110Os.47623.1.A1_at11/1111+1118747..1122351GRAS family transcription factor containing protein, expressed
LOC_Os11g03120OsAffx.18646.1.S1_at11/1111+1125514..1126413hypothetical protein
LOC_Os11g03130OsAffx.19459.1.S1_at11/1111+1127569..1129824hypothetical protein
LOC_Os11g03140OsAffx.6978.1.S1_at11/1111+1130699..1131363hypothetical protein
LOC_Os11g03150OsAffx.18648.1.S1_at11/1111+1132890..1133960hypothetical protein
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24025.1.S1_at--94--9931Chr11:1135245..1135269 (25 bp)
TACTGTATAACTTGAGTGTTCACTA
LOC_Os11g03160
Os.24025.1.S1_at--39--9811Chr11:1135238..1135262 (25 bp)
TAACTTGAGTGTTCACTAGCATGGC
LOC_Os11g03160
Os.24025.1.S1_at--765--10751Chr11:1135234..1135258 (25 bp)
TTGAGTGTTCACTAGCATGGCATGT
LOC_Os11g03160
Os.24025.1.S1_at--57--8891Chr11:1135233..1135257 (25 bp)
TGAGTGTTCACTAGCATGGCATGTA
LOC_Os11g03160
Os.24025.1.S1_at--641--731Chr11:1135205..1135229 (25 bp)
ATGTAGAATGCCTCAACCCGCAAGT
LOC_Os11g03160
Os.24025.1.S1_at--433--6951Chr11:1135203..1135227 (25 bp)
GTAGAATGCCTCAACCCGCAAGTAT
LOC_Os11g03160
Os.24025.1.S1_at--725--1471Chr11:1135201..1135225 (25 bp)
AGAATGCCTCAACCCGCAAGTATTG
LOC_Os11g03160
Os.24025.1.S1_at--744--4451Chr11:1135196..1135220 (25 bp)
GCCTCAACCCGCAAGTATTGGGTGA
LOC_Os11g03160
Os.24025.1.S1_at--457--8731Chr11:1135139..1135163 (25 bp)
TGTCACACCAATGTCTAAGTTTTGA
LOC_Os11g03160
Os.24025.1.S1_at--58--2171Chr11:1135135..1135159 (25 bp)
ACACCAATGTCTAAGTTTTGAGATC
LOC_Os11g03160
Os.24025.1.S1_at--20--2991Chr11:1135130..1135154 (25 bp)
AATGTCTAAGTTTTGAGATCTTTGC
LOC_Os11g03160
Target Sequence 
TACTGTATAACTTGAGTGTTCACTAGCATGGCATGTANAGATGTAGAATGCCTCAACCCGCAAGTATTGGGTGATTCTTT
CTTTCTTCTTCAAGGCCTATGTACCATGTCACACCAATGTCTAAGTTTTGAGATCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis